Table 1. Differentially expressed microRNAs in testis and sperm of Western vs. standard diet fed males.
Name | Read number | Fold change | Reference | ||
---|---|---|---|---|---|
RNA-seq testis | RNA-seq testis | q-RT miRNA testis | q-RT miRNA sperm | ||
Downregulated miRNAs | |||||
mmu-miR-183-5p | 24 | 1.95* | 1,8† | 1,3 | 10,39 |
mmu-miR-182-5p | 54 | 1.75** | 2† | 1,7† | 39 |
Upregulated miRNAs | |||||
mmu-miR-124-3p | 103 | 1.95* | ND | ND | 40,41 |
mmu-miR-30e-5p | 421 | 1.95* | 1,1 | 1,2 | 40 |
mmu-miR-468-5p | 78 | 1.65* | ND | ND | 40,41 |
mmu-miR-29a-5p§ | 8161 | 1.5* | 1,5† | 1,3† | 40,41 |
let-7i-3p§ | 41 | 1.6** | 2 | 1 | 40 |
mmu-miR-340-5p | 61 | 1.5** | 1,5† | 1,7† | 26,42 |
mmu-miR-146a-5p | 21 | 1.8* | ND | ND | 41 |
mmu-miR-376b-5p | 15 | 1.8* | ND | ND | 40,41 |
mmu-miR-19b-3p§ | 16211 | 1.5* | 1,8† | 1,9† | 40,41 |
mmu-miR-19a-3p§ | 3058 | 1.5* | 1,8† | 1,9† | 40,41 |
mmu-miR-101b-3p | 344 | 1.5** | ND | ND | 27,41 |
Validation of selected differentially expressed miRNA (*p < 0.05, **p < 0.01) by quantitative reverse transcription polymerase reaction. Values are miRNA expression levels relative to internal controls (n = 10 for each group). SNORD61 was used for normalisation because of its stable expression in Western Diet vs. Standard Diet. The p value was calculated using the t test between western and standard diet samples †p < 0.05). The column “Reference” indicates the published articles showing an association between the indicated miRNA and the development of obesity and/or diabetes in different systems.