Genome size |
56.8 Mbp |
Sequencing depth |
26× |
No. of contigs |
8,193 |
No. of scaffolds (>2 kb) |
1,336 |
Contig N/L50 |
1,265/11.14 kb |
Scaffold N/L50 |
9/1.39 Mbp |
Guanine and cytosine content |
66.6% |
Gene model quality |
|
Gene count |
10,284 |
Multiexon genes |
10,171 (98.9%) |
Complete models with both start and stop codons |
9,228 (89.7%) |
Complete models extend both to 5′ and 3′ untranslated regions |
9,159 (89.1%) |
Gene model support |
|
Models with cDNA support (454 RNA sequencing [RNA-seq]) |
8,317 (80.9%) |
Models with homology support (NCBI nr database) |
8,992 (87.4%) |
Models with Pfam domain alignments |
6,249 (60.8%) |
Models with CDD alignments |
5,378 (52.3%) |
Models with Kyoto Encyclopedia of Genes and Genomes (KEGG)/European Commission assignments |
7,799 (75.8%) |
Models with GO assignments |
5,639 (54.8%) |