Skip to main content
. 2015 Oct 20;169(4):2444–2461. doi: 10.1104/pp.15.01174

Table I. General features of C. pyrenoidosa FACHB-9 genome.

Assembly Features for Nuclear Genome Results
Genome size 56.8 Mbp
Sequencing depth 26×
No. of contigs 8,193
No. of scaffolds (>2 kb) 1,336
Contig N/L50 1,265/11.14 kb
Scaffold N/L50 9/1.39 Mbp
Guanine and cytosine content 66.6%
 Gene model quality
 Gene count 10,284
 Multiexon genes 10,171 (98.9%)
 Complete models with both start and stop codons 9,228 (89.7%)
 Complete models extend both to 5′ and 3′ untranslated regions 9,159 (89.1%)
Gene model support
 Models with cDNA support (454 RNA sequencing [RNA-seq]) 8,317 (80.9%)
 Models with homology support (NCBI nr database) 8,992 (87.4%)
 Models with Pfam domain alignments 6,249 (60.8%)
 Models with CDD alignments 5,378 (52.3%)
 Models with Kyoto Encyclopedia of Genes and Genomes (KEGG)/European Commission assignments 7,799 (75.8%)
 Models with GO assignments 5,639 (54.8%)