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. 2015 Dec 15;6:1051. doi: 10.3389/fpls.2015.01051

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Copyright © 2015 Lorrain, Hecker and Duplessis.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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M. larici-populina predicted secretome and cysteine content. (A) Composition of the M. larici-populina predicted secretome. Bars indicate the percentage of predicted secreted proteins (SPs): proteins of unknown function (orange), carbohydrate active enzymes (CAZymes; blue), lipases (red), proteases (green) and other functions (purple). The secretome prediction reported here has been updated based on the current version of the poplar rust genome available at the Joint Genome Institute Mycocosm (May 2015; http://genome.jgi-psf.org/programs/fungi). Annotation of SP functions was based on the expert curation reported in Duplessis et al. (2011a) and updated for CAZymes, Lipases and Proteases. (B) Cysteine content in M. larici-populina SPs. The percentage of cysteine residues per proteins are symbolized by box plots where the top and bottom of the boxes show the 25 and 75% quartiles, respectively, and the middle line indicates the median (50% quartile). The bottom whisker corresponds to the 1.5 interquartile range of the lower quartile and the top whisker indicates the 1.5 interquartile range of the upper quartile. White circles represent outliers.