Table 1.
Results of primer extension assays in solution.[a]
Template, primer[b] | NMP[c] | Cat.[d] | Buffer[e] | pH | T [C°] | t [h] | Exten- sion [%] |
---|---|---|---|---|---|---|---|
1, 2 | G | – | A | 6.7 | 20 | 24 | <1 |
1, 2 | G | Im | A | 6.7 | 20 | 24 | 2 |
1, 2 | G | 2-MeIm | A | 6.7 | 20 | 24 | 8 |
1, 2 | G | MeAde | A | 7.7 | 20 | 24 | 12 |
1, 2 | G | 1-EtIm | A | 6.7 | 20 | 24 | 32 |
1, 2 | G | 1-EtIm | A | 5.5 | 20 | 24 | 44 |
1, 2 | G | 1-EtIm | A | 6.5 | 20 | 24 | 62 |
1, 2 | G | 1-EtIm | A | 7.0 | 20 | 24 | 63 |
1, 2 | G | 1-EtIm | A | 7.5 | 20 | 24 | 74 |
1, 2 | G | 1-EtIm | A | 7.9 | 20 | 24 | 73 |
1, 2 | G | 1-EtIm | A | 7.9 | 20 | 48 | 90 |
3, 2 | G+C | 1-EtIm | A | 7.5 | 20 | 140 | 95 |
4, 5 | U | 1-EtIm | A | 7.5 | 20 | 50 | 75 |
4, 5 | U | 1-EtIm | B | 7.5 | 0 | 120 | 92 |
[a] For conditions, see General Protocol 1 in the Supporting Information.
[b] 60 μm Template, 50 μm primer.
[c] 20 mm GMP; or 150 mm UMP; or 50 mm GMP and 50 mm CMP. [d] Catalysts: Im, imidazole; 2-MeIm, 2-methylimidazole; MeAde, 1-methyladenine; 1-EtIm, 1-ethylimidazole (0.1 m of either for Buffer A; 0.15 m 1-ethylimidazole for Buffer B).
[e] Buffer A=0.2 m HEPES, 0.4 m NaCl, 0.16 m MgCl2, 0.8 m EDC; Buffer B=0.5 m HEPES, 0.08 m MgCl2, 0.8 m EDC.