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. Author manuscript; available in PMC: 2017 Jan 1.
Published in final edited form as: Virology. 2015 Nov 5;487:215–221. doi: 10.1016/j.virol.2015.09.026

Table 2.

Differences between HSV KOS and KOS1.1 coding sequences.*

UL36 tegument Repeat length variation
 KOS: 2881 PQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQ
PQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQPQ
 KOS1.1: 2881 —PQPQPQPQPQPQPQPQPQPQPQPQPQPQPXXXXXXXXPQPQPQPQPQPQPQPQPQPQ
UL27 gB One codon change
 KOS: 481 PPPPGASANASVERIKTTSSIEFARLQFTYNHIQRHVNDMLGRVAIAWCELQNHELTLWN
PPPPGASANASVERIKTTSSIEFARLQFTYNHIQ HVNDMLGRVAIAWCELQNHELTLWN
 KOS1.1: 481 PPPPGASANASVERIKTTSSIEFARLQFTYNHIQHHVNDMLGRVAIAWCELQNHELTLWN
UL30 Polymerase One codon change
 KOS: 541 NAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSA
NAVAEAVLKDKKKDLSYRDIPAYYA GPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSA
 KOS1.1: 541 NAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLELSA
UL39 Ribonucleotide Reductase One codon change
 KOS: 361 FCSPPRLTEDDFGLLNYALVEMQRLCLDVPPVLPNAYMPYYLREYVTRLVNGFKPLVSRS
FCSPPRLTEDDFGLLNYALVEMQRLCLDVPPV PNAYMPYYLREYVTRLVNGFKPLVSRS
 KOS1.1: 361 FCSPPRLTEDDFGLLNYALVEMQRLCLDVPPVPPNAYMPYYLREYVTRLVNGFKPLVSRS
RS1 ICP4 One codon change
 KOS: 61 DGRAPAAGTDAGEDAGDAVSSRQLALLASMVEEAVRTIPTPDPAASPPRTPAFLADDDDG
DGRAPAAGTDAGEDAGDAVS RQLALLASMVEEAVRTIPTPDPAASPPRTPAFLADDDDG
 KOS1.1: 61 DGRAPAAGTDAGEDAGDAVSPRQLALLASMVEEAVRTIPTPDPAASPPRTPAFLADDDDG
*

Numbers show codon position relative to the AUG. Amino acid changes are shown in boldface and indels with (—).