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. Author manuscript; available in PMC: 2015 Dec 16.
Published in final edited form as: Infect Genet Evol. 2014 Dec 11;30:65–73. doi: 10.1016/j.meegid.2014.12.005

Fig. 6.

Fig. 6

Phylogenetic relationships of the new SIVagm strain (SIVagmTAN-CM545) to previously characterized SIVagm strains in the integrase region of pol gene. A 575 bp alignment in the integrase region of the polymerase gene of SIVagmTAN-CM545 together with other SIVagm was phylogenetically analyzed with maximum likelihood (ML) methods using PHYML (Guindon and Gascuel, 2003). Highlighted group of sequences indicate geographic clusters of different SIVagm strains. SIVagmTAN-CM545 is boxed in red, between the clusters of SIVagmSAB from Senegal and Gambia. SIVagm are color-coded as on Fig. 1. Asterisks on branches represent bootstrap values >70% from 1000 pseudo-replicates. Scale bars are in substitutions per site. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)