Table 1. List of algal strains and samples used for 16S metabarcoding experiments.
Name | Sex | Origin | Year | Isolator | ITS accession | Culture medium | Growth in DSWM |
Culture medium |
Alga |
||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
No. samples | Dsim | No. OTUs | No. samples | Dsim | No. OTUs | ||||||||
371 | Sp | Hopkins River, AUS | 1995 | J West | FR668844 | SWM | Yes | 1 | 0.15 | 43 | 3 | 0.13-0.16 | 74-84 |
DSWM | Yes | 1 | 0.18 | 95 | 3 | 0.13-0.18 | 71-80 | ||||||
Bft 1a | f | Beaufort, USA | 1978 | DG Müller | FR668733 | SWM | No | 1 | 0.34 | 39 | 1 | 0.19 | 61 |
Bft 15b | m | Beaufort, USA | 1978 | DG Müller | FR668734 | SWM | No | 1 | 0.14 | 76 | 1 | 0.33 | 53 |
Par 10b | f | Port Aransas, USA | 1978 | DG Müller | FR668791 | SWM | No | 1 | 0.50 | 51 | 1 | -c | 19c |
PAr 10n_2 | f | Port Aransas, USA | 1978 | DG Müller | FR668792 | SWM | Yes | 1 | 0.14 | 72 | 1 | 0.12 | 48 |
PAr 27a | m | Port Aransas, USA | 1978 | DG Müller | FR668795 | SWM | Yes | 1 | 0.20 | 53 | 1 | 0.12 | 54 |
PAr 1027 | sp | Port Aransas, USA | 1978 | DG Müller | unpublished | SWM | No | 1 | 0.35 | 69 | 1 | 0.27 | 59 |
Tam 2b | m | Tampa, USA | 1978 | DG Müller | FR668803 | SWM | Yes | 1 | 0.53 | 51 | 1 | 0.22 | 67 |
Tam 12b | m | Tampa, USA | 1978 | DG Müller | FR668804 | SWM | No | 1 | 0.37 | 56 | 1 | 0.50 | 52 |
Tam 18b | f | Tampa, USA | 1978 | DG Müller | FR668805 | SWM | Yes | 1 | 0.27 | 85 | 1 | 0.27 | 33 |
Tam 19c | m | Tampa, USA | 1978 | DG Müller | FR668806 | SWM | C.d. | 1 | 0.24 | 59 | 1 | 0.20 | 67 |
Grh 6c | sp | Grinhigen, SW | 1979 | DG Müller | FR668907 | SWM | C.d. | 1 | 0.17 | 40 | 1 | 0.39 | 39 |
Kal 1c | sp | Killvik, SW | 1979 | DG Müller | FR668909 | SWM | Yes | 1 | 0.65 | 64 | 1 | 0.16 | 59 |
Bri_1 | sp | Pill, UK | 2008 | AF Peters | unpublished | SWM | Yes | 1 | 0.37 | 56 | 1 | 0.70 | 68 |
Bri_3 | sp | Pill, UK | 2008 | AF Peters | unpublished | SWM | Yes | 1 | 0.17 | 54 | 1 | 0.13 | 60 |
DEV11_1a | m | Kingsbridge, UK | 2011 | AF Peters | unpublished | SWM | No | 1 | 0.43 | 49 | 1 | 0.21 | 60 |
Ter11_1 | sp | Terenez, FR | 2011 | AF Peters | unpublished | SWM | No | 1 | 0.27 | 61 | 1 | 0.17 | 60 |
Ter11_2 | sp | Terenez, FR | 2011 | AF Peters | unpublished | SWM | Yes | 1 | 0.20 | 68 | 1 | 0.09 | 33 |
Rsa001 | sp | Muizenberg, RSA | 2004 | D Schroeder | unpublished | SWM | Yes | 1 | 0.31 | 52 | 1 | 0.70 | 35 |
Rsa002 | Sp | Muizenberg, RSA | 2004 | D Schroeder | unpublished | SWM | Yes | 1 | 0.13 | 58 | 1 | -c | 31c |
Ec32b | m | San Juan de Marcona, Peru | 1988 | AF Peters | genome | SWM | C.d. | 1 | 0.18 | 56 | 1 | 0.17 | 59 |
Abbreviations: DSWM, diluted seawater medium; f, female strain; ITS, internal transcribed spacer; m, male strain; OTU, operational taxonomic unit; sp, heterozygous sporophytes; SWM, seawater medium. The capacity of a strain to grow in DSWM was determined in a separate experiment with three biological replicates. ‘C.d.'=cell death, that is, cultures showed clear bleaching after 5 weeks of exposure.
This strain is likely to represent a species different from the remaining strains, despite high phenotypic similarity.
This strain is the genome-sequenced purely marine strain of E. siliculosus.
For these samples, less than 7891 sequences were obtained and no diversity-index was calculated.