Table 3.
Differentially expressed and differentially methylated genes between bolting-resistant and bolting-sensitive sugar beet genotypes
Genes were considered to be differentially expressed between genotypes when the fold change was >2 and the t-test P-value <0.05, and differentially methylated between genotypes when the fold change was >2.
| Sugar beet accession | Sugar beet ID gene | Arabidopsis thaliana description | Biological process and/or molecular function | Arabidopsis AGI | E-value | Methylation | Expression | ||
|---|---|---|---|---|---|---|---|---|---|
| Methylation level in Sa | Methylation level in Ra | Expression level in Sa | Expression level in Ra | ||||||
| FG345845 | Bv_39660_duks.t1 | HXXXD-type acyl-transferase-like protein | Suberin and cutin polymer biosynthsesis | AT5G07850 | 5.00E-39 | –0.67 | 1.16 | 1.49 | -1,62 |
| BQ589458 | No significant hit | No significant hit | NA | NA | NA | 0.53 | –0.52 | 0.85 | -0,66 |
| BQ586261 | Bv6_125340_epqo.t1 | Germin-like protein 5 (GLP5/ PDGLP1) | Early development, defence, apoptosis | AT1G09560 | 6.00E-71 | 0.72 | –0.42 | 0.30 | -0,75 |
| FG343208 | Bv7u_181680_otyh.t1 | Beta-amyrin synthase | Triterpenoid synthesis | AT1G78950 | 4.00E-74 | 1.15 | –0.04 | –0.61 | 0,93 |
| BQ582907 | Bv7_160760_mmcw. t1 | Carotenoid epsilon-ring hydroxylase (LUT1/CYP97C1) | Carotenoid biosynthesis, leaf morphogenesis | AT3G53130 | 5.00E–40 | 1.22 | –0.07 | 1.01 | -0,89 |
| FG344953 | Bv3_049870_xxoz.t1 | 1-Aminocyclopropane-1- carboxylate oxidase-like protein 9 | Ethylene biosynthesis | AT1G06620 | 6.00E-74 | 1.40 | 0.17 | 0.63 | -0,41 |
| BQ582428 | Bv4u_091120_gpyr.t1 | RNA polymerase II transcription mediator activity | Transcriptional regulation of specific signalling pathways | AT3G01435 | 2.00E-52 | 1.43 | 0.21 | –1.01 | 0,88 |
| CF543348 | No significant hit | No significant hit | NA | NA | NA | 1.59 | 0.53 | –2.36 | 2,26 |
| CK136737 | Bv4_074360_ejeh.t1 | Cystatin 6 (CYSB) | Cysteine proteinase inhition, response to stress | AT3G12490 | 4.00E-35 | 1.69 | 0.57 | 0.99 | -0,93 |
| BQ589845 | Bv4u_091720_azjm.t1 | No significant hit | NA | NA | NA | 1.89 | 0.68 | –2.35 | 2,03 |
| FG345537 | Bv9_208140_cjcm.t1 | No significant hit | NA | NA | NA | 1.99 | 0.29 | –1.01 | 1,60 |
| BQ489455 | Bv7_169260_ewnm. t1 | ATPase E1-E2 type family protein | ER to Golgi vesicle-mediated transport | AT1G17500 | 2.00E-37 | 2.13 | 0.63 | –2.59 | 1,44 |
| BQ585496 | Bv2_042300_ners.t1 | SPX domain-containing protein 4 (SPX4) | Response to phosphate starvation | AT5G15330 | 8.00E-23 | 2.48 | 1.16 | 0.35 | -0,68 |
| BQ488791 | No significant hit | No significant hit | NA | NA | NA | 2.52 | 1.43 | –0.45 | 1,03 |
R, bolting resistant; S, bolting sensitive; NA, not available.
aAverage of the normalized values when several probes corresponded to the same accession.