Table 7. Classification of SSR repeats in the hydrangea transcriptome assembly.
SSR data | |
Number of seqs searched | 29,057 |
Total size of sequences (bp) | 52,904,098 |
Number of SSRs | 15,899 |
Number of SSR contining seqs | 10,396 |
Number of seqs containing more than one SSR | 3,792 |
Number of compound SSRs | 1,318 |
Distribution of SSR repeat types | |
Mono-nucleotides (≥10 repeats) | 6123(38.51%) |
Di-nucleotides (≥6 repeats) | 7335(46.13%) |
Tri-nucleotides (≥5 repeats) | 2258(14.20%) |
Tetra-nucleotides (≥5 repeats) | 135(0.85%) |
Penta-nucleotides (≥5 repeats) | 23(0.14%) |
Hexa-nucleotides (≥5 repeats) | 25(0.16%) |