Table 1. Rare non-synonymous CLN8 variations identified by resequencing.
dbSNP ID | Position a | Allele b | Exon | Protein | GERP | Function prediction | CADD | MAF | ||
---|---|---|---|---|---|---|---|---|---|---|
PolyPhen-2 | SIFT | HGVD | 1K (JPT) | |||||||
- | 1719291 | G/A | 2 | R24H | 5.09 | Probably damaging | Tolerated | 25.7 | - | - |
rs201670636 | 1719337 | T/G | 2 | F39L | -9.35 | Probably damaging | Tolerated | 9.4 | 0.0020 | 0.0060 |
rs116605307 | 1719510 | G/A | 2 | R97H | -7.78 | Benign | Tolerated | 0.7 | 0.0013 | 0 |
rs143701028 | 1719543 | C/T | 2 | T108M | 5.06 | Possibly damaging | Tolerated | 22.6 | - | 0.0060 |
rs138581191 | 1719675 | A/G | 2 | N152S | 3.9 | Possibly damaging | Tolerated | 2.8 | 0.0023 | - |
CADD, Combined Annotation Dependent Depletion; GERP, Genomic Evolutionary Rate Profiling; 1K, 1000 Genomes; HGVD, the Human Genetic Variation Database; JPT, Japanese in Tokyo; MAF, mutant allele frequency.
aPosition on chromosome 8 according to GRCh37.
bReference/mutant allele.