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. 2015 Dec 14;10(12):e0144624. doi: 10.1371/journal.pone.0144624

Table 1. Rare non-synonymous CLN8 variations identified by resequencing.

dbSNP ID Position a Allele b Exon Protein GERP Function prediction CADD MAF
PolyPhen-2 SIFT HGVD 1K (JPT)
- 1719291 G/A 2 R24H 5.09 Probably damaging Tolerated 25.7 - -
rs201670636 1719337 T/G 2 F39L -9.35 Probably damaging Tolerated 9.4 0.0020 0.0060
rs116605307 1719510 G/A 2 R97H -7.78 Benign Tolerated 0.7 0.0013 0
rs143701028 1719543 C/T 2 T108M 5.06 Possibly damaging Tolerated 22.6 - 0.0060
rs138581191 1719675 A/G 2 N152S 3.9 Possibly damaging Tolerated 2.8 0.0023 -

CADD, Combined Annotation Dependent Depletion; GERP, Genomic Evolutionary Rate Profiling; 1K, 1000 Genomes; HGVD, the Human Genetic Variation Database; JPT, Japanese in Tokyo; MAF, mutant allele frequency.

aPosition on chromosome 8 according to GRCh37.

bReference/mutant allele.