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. 2015 Dec 18;6:1099. doi: 10.3389/fpls.2015.01099

Table 3.

QTL for yield components, plant height, and physiological traits in the Zhou8425B/Chinese Spring population.

Trait Location and year QTL Positiona Marker interval LODb PVE(%)c Addd
TKW Zhoukou2013 QTKW.caas-3DL 57 IBV5136—Excalibur_c32309_395 3.16 3.9 −0.88
QTKW.caas-4AL 141 wsnp_Ra_rep_c70233_67968353—RAC875_c29282_566 2.62 3.3 −0.8
QTKW.caas-4BS.1 24 BobWhite_c162_145—Kukri_c66885_230 2.69 3.3 0.92
QTKW.caas-6A.1 73.5 Ku_c32392_967—wsnp_RFL_Contig2523_2130662 5.98 7.3 −1.14
QTKW.caas-7AL 172 Kukri_rep_c97425_164—RAC875_c18798_103 3.66 5.4 −1.05
Zhengzhou2013 QTKW.caas-1AL.4 125 BS00036104_51—Ra_c5683_1762 4.33 5.1 −0.96
QTKW.caas-4AL 141 wsnp_Ra_rep_c70233_67968353—RAC875_c29282_566 4.59 5.5 −1.27
QTKW.caas-5AL.1 220 TA005992-0641—Tdurum_contig82476_184 3.35 4.5 1.37
QTKW.caas-6A.1 73.5 Ku_c32392_967—wsnp_RFL_Contig2523_2130662 7.71 4.8 −1.03
QTKW.caas-7AL 172 Kukri_rep_c97425_164 —RAC875_c18798_103 2.86 6.5 −1.19
QTKW.caas-7BL 131 Tdurum_contig63207_82—Tdurum_contig15734_221 3.71 4.3 −0.86
Zhoukou2014 QTKW.caas-2DL.1 65 D_GBB4FNX01D4DHE_47—RAC875_c79540_228 3.38 4.5 −0.82
QTKW.caas-5AS.1 44.5 wsnp_Ex_rep_c71219_70023450—Kukri_c24642_426 2.81 3.4 −0.9
QTKW.caas-5BL 61 wsnp_Ra_c5634_9952011—RAC875_c14882_275 6.54 8.2 −1.1
QTKW.caas-6A.1 73.5 Ku_c32392_967—wsnp_RFL_Contig2523_2130662 7.71 9.9 −1.31
QTKW.caas-7AL 172 Kukri_rep_c97425_164—RAC875_c18798_103 2.86 3.5 −0.81
QTKW.caas-7BL 131 Tdurum_contig63207_82—Tdurum_contig15734_221 3.55 4.3 −1.05
Zhengzhou2014 QTKW.caas-2DL.2 1 wsnp_Ku_c8712_14751858—Ku_c19185_1569 4.44 5.3 −1.03
QTKW.caas-4AL 141 wsnp_Ra_rep_c70233_67968353—RAC875_c29282_566 2.96 3.4 −1.07
QTKW.caas-5AS.1 44.5 wsnp_Ex_rep_c71219_70023450—Kukri_c24642_426 2.9 3.5 −0.98
QTKW.caas-5AL.2 183 Kukri_rep_c102608_599—Tdurum_contig13810_485 5.12 6.0 −1.25
QTKW.caas-6A.1 73.5 Ku_c32392_967—wsnp_RFL_Contig2523_2130662 7.82 9.2 −1.31
QTKW.caas-7AL 172 Kukri_rep_c97425_164—RAC875_c18798_103 4.56 5.4 −1.09
QTKW.caas-7BL 131 Tdurum_contig63207_82—Tdurum_contig15734_221 3.53 4.0 −1.05
Average QTKW.caas-3DL 57 IBV5136—Excalibur_c32309_395 5.37 5.8 −1.01
QTKW.caas-4AL 141 wsnp_Ra_rep_c70233_67968353—RAC875_c29282_566 5.83 6.6 −0.97
QTKW.caas-5AL.2 183 Kukri_rep_c102608_599—Tdurum_contig13810_485 3.95 4.2 −1.16
QTKW.caas-6A.1 73.5 Ku_c32392_967—wsnp_RFL_Contig2523_2130662 9.3 10.3 −0.85
QTKW.caas-7AL 172 Kukri_rep_c97425_164—RAC875_c18798_103 4.52 4.8 −1.01
QTKW.caas-7BL 131 Tdurum_contig63207_82—Tdurum_contig15734_221 5.22 5.5 −0.96
KNS Zhoukou2013 QKNS.caas-2B.1 92 Tdurum_contig10048_447—IAAV1381 2.9 5.7 −1.79
QKNS.caas-3AL 228.3 RAC875_c61934_186—wsnp_Ex_c45877_51547406 6.98 10.9 2.46
QKNS.caas-4AL 139 Kukri_rep_c106490_583—RAC875_c29282_566 3.39 5.1 −1.68
QKNS.caas-7BS 18 BS00011652_51—BS00081132_51 3.02 4.6 1.6
Zhengzhou2013 QKNS.caas-3AL 228.3 RAC875_c61934_186—wsnp_Ex_c45877_51547406 3.18 5.1 1.67
QKNS.caas-3B 166 RAC875_c10909_1180—BobWhite_c22016_155 3.42 5.6 −1.75
QKNS.caas-4AL 139 Kukri_rep_c106490_583—RAC875_c29282_566 6.44 10.5 −2.4
Zhoukou2014 QKNS.caas-2B.2 12 Tdurum_contig98206_211—RFL_Contig1483_1765 3.45 4.4 −1.54
QKNS.caas-3AL 228.3 RAC875_c61934_186—wsnp_Ex_c45877_51547406 2.79 3.4 1.35
QKNS.caas-3B 166 RAC875_c10909_1180—BobWhite_c22016_155 3.32 4.1 −1.48
QKNS.caas-4AL 139 Kukri_rep_c106490_583—RAC875_c29282_566 7.23 9.1 −2.22
QKNS.caas-4BL.1 100 BobWhite_c8266_582—GENE-2826_154 3.7 4.7 −1.59
QKNS.caas-6BL 178 RAC875_c28848_330—BS00065202_51 3.84 5.0 1.7
Zhengzhou2014 QKNS.caas-1BS.1 43 Kukri_c1529_462—Kukri_c8390_547 4.13 7.5 1.83
QKNS.caas-2D 29 Kukri_c14902_1112—RAC875_c77816_365 2.62 5.3 −1.29
QKNS.caas-4AL 139 Kukri_rep_c106490_583—RAC875_c29282_566 6.42 9.4 −1.59
QKNS.caas-2AL.1 143 BS00014251_51—IBV80 5.11 5.4 −1.29
Average QKNS.caas-2B.1 92 Tdurum_contig10048_447—IAAV1381 4.88 6.1 −1.37
QKNS.caas-3AL 228.3 RAC875_c61934_186—wsnp_Ex_c45877_51547406 7 7.2 1.48
QKNS.caas-3B 166 RAC875_c10909_1180—BobWhite_c22016_155 5.21 8.8 −1.83
QKNS.caas-4AL 139 Kukri_rep_c106490_583—RAC875_c29282_566 10.93 11.8 −1.89
SN Zhoukou2013 QSN.caas-1AL.1 47.5 IACX592—Jagger_c1403_60 7.66 13.8 −17.49
QSN.caas-3AL 141 Ra_c14565_1056—Tdurum_contig64606_1104 2.63 6.4 −21.19
QSN.caas-7AL 170 BS00023673_51—wsnp_JD_c18814_17164689 3.39 6.4 −20.53
Zhengzhou2013 QSN.caas-1AL.1 47.5 IACX592—Jagger_c1403_60 8.59 11.4 −34.46
QSN.caas-1BL 122 D_contig12192_450—Tdurum_contig8840_575 2.62 3.4 −18.77
QSN.caas-2BL 35 Excalibur_c19260_105—IACX8096 3.63 6.7 26.32
QSN.caas-3AS 113 wsnp_Ku_c40218_48484410—wsnp_Ex_rep_c106152_90334299 2.95 3.8 −19.75
Zhoukou2014 QSN.caas-1AL.1 47.5 IACX592—Jagger_c1403_60 5.51 8.0 −20.08
QSN.caas-2AS.3 126 JG_c883_445—Kukri_rep_c104727_91 3.91 5.6 16.75
QSN.caas-3AL 141 Ra_c14565_1056—Tdurum_contig64606_1104 3.93 7.9 −20.07
QSN.caas-5BS.1 9 BS00032003_51—BS00070871_51 2.92 4.3 14.69
QSN.caas-6AL.1 75 RAC875_c7804_236—Excalibur_c36332_449 3.66 5.3 −16.19
Zhengzhou2014 QSN.caas-1AL.1 47.5 IACX592—Jagger_c1403_60 15.09 17.2 −34.6
QSN.caas-1BL.1 66 IAAV4702—wsnp_BG274294B_Ta_2_3 3.03 2.3 −12.98
QSN.caas-2AS.3 126 JG_c883_445—Kukri_rep_c104727_91 3.81 3.0 14.31
QSN.caas-3AL 141 Ra_c14565_1056—Tdurum_contig64606_1104 9 11.7 −29.26
QSN.caas-6AL.1 75 RAC875_c7804_236—Excalibur_c36332_449 7.12 5.5 −19.5
QSN.caas-7AL 170 BS00023673_51—wsnp_JD_c18814_17164689 6.89 5.9 −20.09
Average QSN.caas-1AL.1 47.5 IACX592—Jagger_c1403_60 12.09 14.2 −24.72
QSN.caas-2AS.3 128 Kukri_c7914_99—wsnp_Ex_c36242_44232305 4.17 4.9 14.57
QSN.caas-3AL 141 Ra_c14565_1056—Tdurum_contig64606_1104 6.93 11.1 −22.1
QSN.caas-6AL.1 75 RAC875_c7804_236—Excalibur_c36332_449 6.33 5.8 −17.92
PH Zhoukou2013 QPH.caas-4AL 90 IHX2890—RAC875_c35171_613 4.37 3.9 −2.56
QPH.caas-4BS.1 11 RAC875_c86104_111—tplb0025f09_1853 4.88 4.9 −2.87
QPH.caas-4BS.2 55 RAC875_c6749_954—BobWhite_c44691_648 21.68 22.8 −6.35
QPH.caas-4DS.1 63.8 RAC875_c13945_597—BS00036421_51 13.66 14.5 −4.99
QPH.caas-5AS 50 Kukri_c24642_426—RFL_Contig2251_434 5.67 14.9 −2.89
QPH.caas-7AL 170 BS00023673_51—wsnp_JD_c18814_17164689 2.99 2.6 2.1
Zhengzhou2013 QPH.caas-4BS.2 55 RAC875_c6749_954—BobWhite_c44691_648 14.87 22.7 −6.67
QPH.caas-4DS.1 63.8 RAC875_c13945_597—BS00036421_51 14.02 23.5 −6.71
QPH.caas-5AS 50 Kukri_c24642_426—RFL_Contig2251_434 5.84 13.2 −2.61
Zhoukou2014 QPH.caas-2BL 58 Tdurum_contig47_148—RAC875_c40992_113 2.62 2.3 2.4
QPH.caas-4AL 90 IHX2890—RAC875_c35171_613 3.25 2.9 −2.69
QPH.caas-4BS.2 55 RAC875_c6749_954—BobWhite_c44691_648 22.59 24.2 −7.98
QPH.caas-4DS.1 63.8 RAC875_c13945_597—BS00036421_51 26.88 33.2 −9.2
QPH.caas-5AS 50 Kukri_c24642_426—RFL_Contig2251_434 5.67 14.3 −2.71
Zhengzhou2014 QPH.caas-2BL 58 Tdurum_contig47_148—RAC875_c40992_113 2.82 2.8 2.93
QPH.caas-4BS.2 55 RAC875_c6749_954—BobWhite_c44691_648 23.1 29.3 −9.58
QPH.caas-4DS.1 63.8 RAC875_c13945_597—BS00036421_51 21.21 29.6 −9.51
Average QPH.caas-4AL 90 IHX2890—RAC875_c35171_613 2.73 2.6 −2.26
QPH.caas-4BS.2 55 RAC875_c6749_954—BobWhite_c44691_648 24.73 27.4 −7.53
QPH.caas-4DS.1 63.8 RAC875_c13945_597—BS00036421_51 24.01 30.0 −7.78
QPH.caas-5AS 50 Kukri_c24642_426—RFL_Contig2251_434 2.95 12.7 −2.31
SL Zhoukou2013 QSL.caas-1BL 66 IAAV4702—wsnp_BG274294B_Ta_2_3 4.86 6.0 0.34
QSL.caas-4AS 57.6 Kukri_c46057_646—RAC875_rep_c77874_269 3.68 4.5 0.28
QSL.caas-4AL.1 146 Kukri_c17417_571—BS00022076_51 7.93 11.2 −0.44
QSL.caas-5AL 157.5 JD_c15758_288—BS00041911_51 5.78 8.7 −0.39
QSL.caas-7AS 168 wsnp_Ex_c200_391493—Ex_c6870_1704 4.1 4.9 0.29
QSL.caas-7DS 60 RAC875_c53629_483—Excalibur_c55782_55 3.27 4.0 0.27
Zhengzhou2013 QSL.caas-1BL 66 IAAV4702—wsnp_BG274294B_Ta_2_3 2.6 3.6 0.24
QSL.caas-3BL 133 Ku_c12191_1202—Excalibur_c3556_520 2.77 3.9 0.24
QSL.caas-4AS 57.6 Kukri_c46057_646—RAC875_rep_c77874_269 7.98 12.3 0.43
QSL.caas-4AL.1 146 Kukri_c17417_571—BS00022076_51 4.67 6.8 −0.32
QSL.caas-5AL 157.5 JD_c15758_288—BS00041911_51 4.24 6.4 −0.31
Zhoukou2014 QSL.caas-2AL 212.5 BS00022265_51—wsnp_Ex_rep_c70299_69243835 3.54 4.3 0.26
QSL.caas-4AS 57.6 Kukri_c46057_646—RAC875_rep_c77874_269 8.53 10.3 0.41
QSL.caas-4AL.1 146 Kukri_c17417_571—BS00022076_51 9.52 11.8 −0.43
QSL.caas-5AL.1 183.5 Kukri_rep_c102608_599—Kukri_c14187_243 7.09 8.7 −0.38
QSL.caas-6BL 156 Ra_c2557_2531—BS00067417_51 3.16 3.6 0.26
QSL.caas-7AS.1 124 Tdurum_contig82438_136—BS00034509_51 4.26 9.6 0.45
Zhengzhou2014 QSL.caas-1BS 42 BS00070878_51—Kukri_c1529_462 4.79 5.2 0.36
QSL.caas-2AL 212.5 BS00022265_51–wsnp_Ex_rep_c70299_69243835 3.65 4.0 0.28
QSL.caas-4AS 57.6 Kukri_c46057_646–RAC875_rep_c77874_269 7.58 8.6 0.4
QSL.caas-4AL.2 98 Ex_c6665_1067—D_GCE8AKX02GF3QZ_210 3.03 5.4 0.32
QSL.caas-4AL.1 146 Kukri_c17417_571—BS00022076_51 9.81 11.9 −0.48
QSL.caas-5AL.1 183.5 Kukri_rep_c102608_599—Kukri_c14187_243 5.37 6.0 −0.34
QSL.caas-6BL 156 Ra_c2557_2531—BS00067417_51 2.91 3.1 0.26
QSL.caas-7AS 168 wsnp_Ex_c200_391493—Ex_c6870_1704 3.58 5.4 0.33
Average QSL.caas-1BS 43 Kukri_c1529_462–Kukri_c8390_547 6.3 8.8 0.44
QSL.caas-4AS 57.6 Kukri_c46057_646—RAC875_rep_c77874_269 11.24 13.3 0.42
QSL.caas-4AL.1 146 Kukri_c17417_571—BS00022076_51 11.91 14.9 −0.44
QSL.caas-4AL.2 98 Ex_c6665_1067—D_GCE8AKX02GF3QZ_210 2.61 2.7 0.19
QSL.caas-5AL 159 JD_c15758_288—BS00041911_51 6.89 9.1 −0.35
QSL.caas-7AS 168 wsnp_Ex_c200_391493—Ex_c6870_1704 4.55 4.8 0.25
Chl-A Zhoukou2013 QChl-A.caas-2AS 45 wsnp_Ex_c322_624793—Tdurum_contig10785_103 2.59 4.5 0.51
QChl-A.caas-3AS 111 wsnp_Ku_c11052_18135847— wsnp_Ra_c16278_24893033 3.46 5.6 0.56
QChl-A.caas-5AL 68.5 BS00109052_51—wsnp_BE443187A_Ta_2_3 3.89 6.5 0.6
Zhengzhou2013 QChl-A.caas-2AL.1 199 Kukri_c25901_348—Tdurum_contig11659_253 3.42 5.1 0.71
QChl-A.caas-2DS 55 BS00081578_51—tplb0021c10_951 3.75 8.6 0.92
QChl-A.caas-3AS 111 wsnp_Ku_c11052_18135847—wsnp_Ra_c16278_24893033 4.31 6.5 0.8
QChl-A.caas-5AL 68.5 BS00109052_51—wsnp_BE443187A_Ta_2_3 4.33 16.3 0.72
Zhoukou2014 QChl-A.caas-4AL 78 BobWhite_c15697_675—BobWhite_c2179_1476 3.56 7.1 0.92
QChl-A.caas-4DS 67 RAC875_c13945_597—BS00036421_51 3.49 6.3 0.86
QChl-A.caas-5AL 68.5 BS00109052_51—wsnp_BE443187A_Ta_2_3 5.55 8.8 1.01
Zhengzhou2014 QChl-A.caas-2AL.2 140 Excalibur_c84687_162—BS00014251_51 3.94 5.7 −0.82
QChl-A.caas-2DL.1 114 IBV8632—D_contig02226_528 2.75 3.9 0.68
QChl-A.caas-5AL 68.5 BS00109052_51—wsnp_BE443187A_Ta_2_3 5.36 7.8 0.96
QChl-A.caas-5AS.1 227 Tdurum_contig82476_184—Tdurum_contig30719_380 3.01 8.4 1.31
Average QChl-A.caas-2AL.2 140 Excalibur_c84687_162— BS00014251_51 4.27 6.0 −0.61
QChl-A.caas-2AL.1 199 Kukri_c25901_348— Tdurum_contig11659_253 3.53 4.8 0.54
QChl-A.caas-3AS 111 wsnp_Ku_c11052_18135847—wsnp_Ra_c16278_24893033 3.58 4.9 0.55
QChl-A.caas-4DS 64 RAC875_c13945_597—BS00036421_51 4.04 6.2 0.63
QChl-A.caas-5AL 68.5 BS00109052_51—wsnp_BE443187A_Ta_2_3 6.6 9.2 0.75
Chl-10 Zhoukou2013 QChl-10.caas-2D 29 Kukri_c14902_1112—RAC875_c77816_365 4.11 5.5 −1.41
QChl-10.caas-5BL 60 wsnp_Ex_c12909_20457660—wsnp_Ra_c5634_9952011 4.83 8.2 1.78
Zhengzhou2013 QChl-10.caas-2BS 19 RAC875_c21378_474—Tdurum_contig81323_291 3.78 6.3 −1.25
QChl-10.caas-5BL 60 wsnp_Ex_c12909_20457660—wsnp_Ra_c5634_9952011 6.06 10.3 1.59
Zhoukou2014 QChl-10.caas-2D 29 Kukri_c14902_1112—RAC875_c77816_365 4.04 9.2 −1.6
QChl-10.caas-5BL 60 wsnp_Ex_c12909_20457660— wsnp_Ra_c5634_9952011 4.83 7.0 1.33
QChl-10.caas-6AS 21 BS00031062_51—RFL_Contig5170_1904 3.07 4.3 −1
QChl-10.caas-7A 177 BS00023993_51—Ex_c52798_415 3.98 7.9 1.38
Zhengzhou2014 QChl-10.caas-2AL 140 Excalibur_c84687_162—BS00014251_51 5.44 7.0 −0.91
QChl-10.caas-2AL.1 200 Kukri_c25901_348—Tdurum_contig11659_253 4.77 6.1 0.85
QChl-10.caas-2BS 19 RAC875_c21378_474—Tdurum_contig81323_291 5.37 7.8 −0.96
QChl-10.caas-5AL 72 BS00067453_51—Excalibur_c24638_380 4.89 6.8 0.9
QChl-10.caas-5BL 60 wsnp_Ex_c12909_20457660—wsnp_Ra_c5634_9952011 8.09 10.6 1.13
QChl-10.caas-7A 177 BS00023993_51—Ex_c52798_415 2.53 4.2 0.72
Average QChl-10.caas-2BS 19 RAC875_c21378_474—Tdurum_contig81323_291 5.31 8.3 −1.14
QChl-10.caas-5AL 77 RFL_Contig727_736—wsnp_JD_c3867_4934646 2.71 3.5 0.73
QChl-10.caas-5BL 60 wsnp_Ex_c12909_20457660—wsnp_Ra_c5634_9952011 10.19 14.2 1.49
QChl-10.caas-7A 177 BS00023993_51—Ex_c52798_415 3.14 5.7 0.96
NDVI-A Zhengzhou2013 QNDVI-A.caas-4AL 93 Ex_c6665_1067—D_GCE8AKX02GF3QZ_210 3.27 6.5 0.01
QNDVI-A.caas-5BL 128 Tdurum_contig23273_426—BS00065128_51 3.74 6.5 −0.01
Zhoukou2014 QNDVI-A.caas-3AL 230 Tdurum_contig31235_99—wsnp_Ex_c45877_51547406 2.9 4.7 0.01
QNDVI-A.caas-5BS.1 33 Kukri_c10970_573—tplb0046h23_602 3.46 5.7 0.01
Zhengzhou2014 QNDVI-A.caas-1BS 41 BS00070878_51—Kukri_c1529_462 3.88 6.7 0.01
QNDVI-A.caas-4BS 56 RAC875_c6749_954—BobWhite_c44691_648 2.73 4.0 0.01
QNDVI-A.caas-4DS 69 RAC875_c13945_597—BS00036421_51 6.03 9.8 0.01
QNDVI-A.caas-5AL 91 BS00082002_51—wsnp_Ku_c14275_22535576 4.15 6.4 0.01
Average QNDVI-A.caas-3AL 230 Tdurum_contig31235_99—wsnp_Ex_c45877_51547406 2.54 4.3 0.01
NDVI-10 Zhoukou2013 QNDVI-10.caas-2DS 53 BS00081578_51—tplb0021c10_951 2.67 4.4 −0.02
QNDVI-10.caas-5AL 204 BS00055102_51—BS00067351_51 3.94 6.3 −0.02
QNDVI-10.caas-5BL 61 wsnp_Ra_c5634_9952011—RAC875_c14882_275 5.2 8.5 0.02
Zhengzhou2013 QNDVI-10.caas-4BS 53 RAC875_c6749_954— BobWhite_c44691_648 2.93 5.5 0.02
QNDVI-10.caas-5BL 61 wsnp_Ra_c5634_9952011—RAC875_c14882_275 3.52 6.1 0.02
Zhoukou2014 QNDVI-10.caas-5BL 61 wsnp_Ra_c5634_9952011—RAC875_c14882_275 3.69 6.0 0.01
QNDVI-10.caas-6BL 109 Kukri_c63314_962—BobWhite_c36416_56 3.37 5.8 0.01
Zhengzhou2014 QNDVI-10.caas-4DS 68 RAC875_c13945_597—BS00036421_51 3.48 7.0 0.01
QNDVI-10.caas-6BL 109 Kukri_c63314_962—BobWhite_c36416_56 3.86 7.3 0.01
Averages QNDVI-10.caas-5BL 61 wsnp_Ra_c5634_9952011—RAC875_c14882_275 5.09 8.5 0.02
QNDVI-10.caas-6BL 109 Kukri_c63314_962—BobWhite_c36416_56 3.34 6.3 0.01
a

Position of QTL located on chromosome: as cM distance from the top of each map.

b

A LOD threshold of 2.5 was used for declaration of QTL, based on 2000 permutations at a significance level of 0.01.

c

Phenotypic variance explained by QTL.

d

Positive “additive effect” indicates an increasing effect from Chinese Spring; negative “additive effect” indicates an increasing effect from Zhou 8425B.

TKW, thousand kernel weight; KNS, kernel number per spike; SN, spike number/m2; PH, plant height; SL, spike length; Chl-A, SPAD value of chlorophyll content at anthesis; Chl-10, SPAD value of chlorophyll content at 10 days post-anthesis; NDVI-A, normalized difference in vegetation index at anthesis; NDVI-10, normalized difference in vegetation index at 10 days post-anthesis.