Table 2. A NGSQCTOOL kit result for Sample A. Table B NGSQCTOOL kit result for Sample B.
| File name | Sample_A_R1.fastq | Sample_A_R2.fastq | Sample_A_R1.fastq_filtered | Sample_A_R2.fastq_filtered |
|---|---|---|---|---|
| Minimum read length | 101 | 101 | 101 | 101 |
| Maximum read length | 101 | 101 | 101 | 101 |
| Average read length | 101 | 101 | 101 | 101 |
| Total number of reads | 3,16,68,799 | 3,16,68,799 | 2,83,74,854 | 2,83,74,854 |
| Total number of reads with non-ATGC bases | 36,995 | 1,26,987 | 14,586 | 59,585 |
| Percentage of reads with non-ATGC bases | 0.12% | 0.40% | 0.05% | 0.21% |
| Total number of bases | 3,19,85,48,699 | 3,19,85,48,699 | 2,86,58,60,254 | 2,86,58,60,254 |
| Total number of HQ bases | 3,06,00,95,276 | 2,97,07,81,787 | 2,82,34,69,395 | 2,81,95,97,570 |
| Percentage of HQ bases | 95.67% | 92.88% | 98.52% | 98.39% |
| Total number of non-ATGC bases | 40,345 | 35,35,607 | 15,152 | 1,32,394 |
| Percentage of non-ATGC bases | 0.00% | 0.11% | 0.00% | 0.00% |
| File name | Sample_B_R1.fastq | Sample_B_R2.fastq | Sample_B_R1.fastq_filtered | Sample_B_R2.fastq_filtered |
| Minimum read length | 101 | 101 | 101 | 101 |
| Maximum read length | 101 | 101 | 101 | 101 |
| Average read length | 101 | 101 | 101 | 101 |
| Total number of reads | 3,31,86,436 | 3,31,86,436 | 2,91,16,148 | 2,91,16,148 |
| Total number of reads with non-ATGC bases | 48,538 | 1,51,490 | 21,142 | 70,795 |
| Percentage of reads with non-ATGC bases | 0.15% | 0.46% | 0.07% | 0.24% |
| Total number of bases | 3,35,18,30,036 | 3,35,18,30,036 | 2,94,07,30,948 | 2,94,07,30,948 |
| Total number of HQ bases | 3,18,35,14,673 | 3079828686 | 2,88,86,69,480 | 2,88,44,62,871 |
| Percentage of HQ bases | 94.98% | 91.88% | 98.23% | 98.09% |
| Total number of non-ATGC bases | 54,317 | 38,94,084 | 24,353 | 1,58,213 |
| Percentage of non-ATGC bases | 0.00% | 0.12% | 0.00% | 0.01% |