Table 2.
Sequencing statistics
| Bases | Reads | Mean read length | GC % | ||||
|---|---|---|---|---|---|---|---|
| Sequencing data | |||||||
| PGM raw data | 1 GB | 5630598 | 155 (bp) | 38 | |||
| Post trimmomatic data | 974 MB | 5240830 | 185 (bp) | 38 | |||
| Assembled contigs | |||||||
| Assemblies | # Submitted reads | Minimum read length | # Contigs | # Contigs >500 bp | N50 contig size | Mean contig size | Largest contig size |
| Assembly Aa | 5240830 | 50 (bp) | 54246 | 21998 | 3810 (bp) | 1807 (bp) | 171327 (bp) |
| Assembly Ba | 5240830 | 50 (bp) | 278958 | 30987 | 1226 (bp) | 1115 (bp) | 18073 (bp) |
| Assembly Ca | 1984110 | 220 (bp) | 27994 | 14915 | 4380 (bp) | 1899 (bp) | 75139 (bp) |
Dataset-1 sequencing data and assemblies statistics
aSee Material & Methods for details about assembly settings