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452754 loci are significantly differentially methylated (DM) between T and NT based on an FDR < 0.05. Majority of the DM loci are hypomethylated in T vs NT.
| Genomic compartment | # loci on array | Differentially methylated loci FDR p< 0.05 (% of loci represented) | Hypomethylated in tumors | Hypermethylated in tumors |
|---|---|---|---|---|
| Promoters | 151568 | 32037 (26%) | 68% | 31% |
| Gene Body regions | 551628 | 248721 (38%) | 74% | 25% |
| Intergenic regions | 540473 | 171996 (48%) | 93% | 6% |
