Table 1. Mapping characteristics of ‘Rojo Pasión’ (resistant to PPV) and ‘Z506-7’ (susceptible to PPV) apricot genotypes and PPV reads to the reference peach genome (P. persica v 1.0) and the assayed PPV genome (GenBank: KJ849228.1), in the biological replications of the four samples assayed using RNA-Seq.
| Samples | Raw reads | Clean reads | Reads mapped onto the P. persica v 1.0 | Reads mapped onto the PPV genome |
|---|---|---|---|---|
| ‘Z506-7’ control-1 (Zc-1) | 178,863,722 | 172,167,692 (96%) | 121,897,300 (70.3%) | 0 (0.0%) |
| ‘Z506-7’ control-2 (Zc-2) | 184,354,652 | 177,433,648 (96%) | 127,044,113 (71.7%) | 0 (0.0%) |
| ‘Z506-7’ inoculated-1 (Zi-1) | 176,063,990 | 169,306,217 (96%) | 114,750,138 (67.4%) | 8,416,611 (4.9%) |
| ‘Z506-7’ inoculated-2 (Zi-2) | 175,018,826 | 168,574,941 (96%) | 108,567,566 (64.3%) | 10,453,472 (6.2%) |
| ‘Rojo Pasión’ control-1 (Rc-1) | 146,915,604 | 141,354,468 (96%) | 92,423,368 (65.2%) | 0 (0.0%) |
| ‘Rojo Pasión’ inoculated-1 (Ri-1) | 183,145,536 | 175,799,070 (95%) | 124,637,608 (70.8%) | 0 (0.0%) |
| ‘Rojo Pasión’ inoculated-2 (Ri-2) | 165,533,058 | 158,922,500 (95%) | 112,178,376 (70.8%) | 0 (0.0%) |
| Total | 1,209,895,388 | 1,163,558,536 (96%) | 801,498,469 (68.8%) | 18,870,083 (1.6%) |