Table 1. Overview of sequencing and de novo assembly results of mRNA-Seq analyses using RNA collected from Pratylenchus penetrans.
Sample | Total Bases | Read Count | GC (%) | Q20 (%) | Q30 (%) | |||
---|---|---|---|---|---|---|---|---|
Pool of nematodes (sample 1) | 7,916,194,968 | 78,378,168 | 43.21 | 92.18 | 87.37 | |||
Pool of nematodes (sample 2) | 7,202,319,696 | 71,310,096 | 43.84 | 93.56 | 87.65 | |||
Trinity assembly K = 25 | ||||||||
n | n: 100 | n: N50 | min | median | mean | N50 | max | |
de novo assembly | 23,715 | 23,715 | 5,133 | 201 | 578 | 882 | 1,362 | 8,605 |
Only sequences >200 bp were considered for this analysis.