Table 2. List of the top 20 most abundant Pratylenchus penetrans transcripts with annotation to the NR protein database.

		Pratylenchus species
TOP annotated transcript	FPKM	Pc	Pt	Pv	Pz	ANNOTATION—NR database	Top-Hit Species	E-value	Bit Score	Accession
1	11411.7	+	+	+	+	Actin	Ditylenchus destructor	0	788.10	ACT78498
2	4608.6	+	+	+	+	Protein bm210	Brugia malayi	2.63E-25	81.26	CDP91803
3	4037.0	+	+	+	+	Tropomyosin	Heterodera glycines	1.13E-128	384.40	AAQ12016
4	3959.7	+	+	+	+	Fatty acid and retinol binding partial	Radopholus similis	5.19E-93	285.03	AFI80890
5	3008.5	+	+	+	+	Vitellogenin—partial	Ascaris suum	0	634.02	ERG79133
6	2694.2	+	+	+	+	Polyadenylate-binding protein 1	Loa loa	0	702.98	XP_003136646
7	2621.6	+	+	+	+	Protein cpn-3	Haemonchus contortus	3.55E-67	217.62	CDJ87225
8	2319.4	+	+	+	+	Cre-pat-10 protein	Meloidogyne incognita	1.48E-106	316.24	AAW56830
9	2218.3	+	+	+	+	Protein tnt-2 isoform b	Meloidogyne incognita	3.34E-101	320.86	AFG25455
10	2181.7	+		+	+	Actin	Caenorhabditis elegans	1.21E-12	60.10	CAA34718
11	2114.3	+	+	+	+	Protein unc-87	Heterodera glycines	0	711.06	AAT70232
12	2056.7	+	+	+	+	Fatty acid desaturase domain containing protein	Ditylenchus destructor	4.55E-170	493.04	AGT39213
13	1896.2	+	+	+	+	Major sperm protein	Meloidogyne hapla	1.67E-82	256.53	CBA18117
14	1510.4	+	+		+	Heat shock protein 70	Meloidogyne enterolobii	0	175.64	AHG55039
15	1484.2	+	+		+	High mobility group protein	Ascaris suum	1.87E-24	103.22	ERG84055
16	1451.8	+	+	+	+	Ubiquitin extension protein	Heterodera glycines	1.82E-43	153.30	AAN32889
17	1359.4	+	+	+	+	Cre-mlc-3 protein	Ancylostoma ceylanicum	2.65E-83	259.61	EYB88032
18	1347.9	+	+	+	+	Translationally controlled tumor protein	Ostertagia ostertagi	7.56E-91	277.72	CAT00091
19	1317.0	+			+	Lea5 protein	Steinernema carpocapsae	4.27E-07	55.07	ABQ23240
20	1299.3	+			+	Cuticle collagen	Ascaris suum	1.59E-62	216.47	KHN84395

Pc: Pratylenchus coffeae; Pt: Pratylenchus thornei; Pv: Pratylenchus vulnus; Pz: Pratylenchus zeae.