Table 3. Overview of putative cell wall modifying enzymes identified within the Pratylenchus penetrans transcriptome.
| Enzyme | Putative function | P. penetrans | |||
|---|---|---|---|---|---|
| Number of transcripts | Best min. E-value | Best species hit | Sequence ID | ||
| Endo-1,4-β-glucanase (GH5) | Plant cell wall degradation | 21 (SP) | 1.74E-90 | Pratylenchus penetrans | BAB68523 |
| Expansin-like protein | Plant cell wall extension | 7 (SP) | 4.04E-42 | Heterodera glycines | ADL29728 |
| Pectate lyase (PL3) | Plant cell wall degradation | 5 (SP) | 9.28E-84 | Heterodera glycines | ADW77534 |
| Polygalacturonase (GH28) | Plant cell wall degradation | 4 | 1.06E-58 | Meloidogyne incognita | AAM28240 |
| Xylanase (GH30) | Plant cell wall degradation | 3 (SP) | 0 | Radopholus similis | ABZ78968 |
| Arabinogalactan endo-1,4-beta-galactosidase (GH53) | Plant cell wall degradation | 1 (SP) | 7.00E-120 | Heterodera glycines | ACY02856 |
SP: Indicates that at least one sequence of each respective family of enzymes was predicted to have a putative signal peptide.