Table 1.
Organismsource | Scientific Name | Class | Order | Reference |
---|---|---|---|---|
Ray-finned fish | ||||
Asian arowana* | Scleropages formosus | Actinopterygii | Osteoglossiformes | This study |
European eelZ | Anguilla anguilla | Actinopterygii | Anguilliformes | Henkel et al. (2012) |
MedakaE | Oryzias latipes | Actinopterygii | Beloniformes | Kasahara et al. (2007) |
Blind cave fishE | Astyanax mexicanus | Actinopterygii | Characiformes | McGaugh et al. (2014) |
Common carpC | Cyprinus carpio | Actinopterygii | Cypriniformes | Xu et al. (2014) |
ZebrafishE | Danio rerio | Actinopterygii | Cypriniformes | Howe et al. (2013) |
Amazon mollyE | Poecilia formosa | Actinopterygii | Cyprinodontiformes | Unpublished |
Southern platyfishE | Xiphophorus maculatus | Actinopterygii | Cyprinodontiformes | Schartl et al. (2013) |
Northern pikeV | Esox lucius | Actinopterygii | Esociformes | Rondeau et al. (2014) |
Atlantic codE | Gadus morhua | Actinopterygii | Gadiformes | Star et al. (2011) |
Three-spined sticklebackE | Gasterosteus aculeatus | Actinopterygii | Gasterosteiformes | Jones et al. (2012) |
Electric eelF | Electrophorus electricus | Actinopterygii | Gymnotiformes | Gallant et al. (2014) |
Spotted garE | Lepisosteus oculatus | Actinopterygii | Lepisosteiformes | Unpublished |
Nile tilapiaE | Oreochromis niloticus | Actinopterygii | Perciformes | Brawand et al. (2014) |
Atlantic salmonSA | Salmo salar | Actinopterygii | Salmoniformes | Davidson et al. (2010) |
Rainbow troutG | Oncorhynchus mykiss | Actinopterygii | Salmoniformes | Berthelot et al. (2014) |
Japanese pufferE | Takifugu rubripes | Actinopterygii | Tetraodontiformes | Aparicio et al. (2002) |
Green spotted pufferE | Tetraodon nigroviridis | Actinopterygii | Tetraodontiformes | Jaillon et al. (2004) |
Lobe-finned fish | ||||
African coelacanthE | Latimeria chalumnae | Sarcopterygii | Coelacanthiformes | Amemiya et al. (2013) |
aLungfishSR | Protopterus annectens | Sarcopterygii | Lepidosireniformes | Amemiya et al. (2013) |
Cartilaginous fish | ||||
Elephant sharkA | Callorhinchus milii | Chondrichthyes | Chimaeriformes | Venkatesh et al. (2014) |
bSmall-spotted catsharkSK | Scyliorhinus canicula | Chondrichthyes | Carchariniformes | Wyffels et al. (2014) |
bLittle skateSK | Leucoraja erinacea | Chondrichthyes | Rajiformes | Wang et al. (2012) |
Tetrapods | ||||
Western clawed frogE | Xenopus tropicalis | Amphibia | Anura | Fuchs et al. (2006) |
ChickenE | Gallus gallus | Aves | Galliformes | Hillier et al. (2004) |
HumanE | Homo sapiens | Mammalia | Primates | Venter et al. (2001) |
LizardE | Anolis carolinensis | Reptilia | Squamata | Alföldi et al. (2011) |
Note.—Codes for source: A*STAR (A), CarpBase (C), Ensembl (E), efish genomics (F), Genoscope (G), SalmonDB (SA), SkateBase (SK), SRA (SR), UVic (V), ZF Genomics (Z), this study (*).
aRaw transcriptome reads were used.
bAssembled transcripts were used.