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. Author manuscript; available in PMC: 2016 Dec 1.
Published in final edited form as: Methods. 2015 Sep 25;91:40–47. doi: 10.1016/j.ymeth.2015.09.021

Table 1.

Significant LD values (>3σ) between pairs of nucleotides found by CoVaMa using RNAseq data of Flock House Virus grown in cell culture.

Reference Nt 1 Nt 2 Change LD Value
RNA1 31 36 A-C to C-A 0.0099
35 36 A-C to C-A 0.0113
36 54 A-C to C-T 0.0187
187 240 T-G to G-A 0.0037
192 240 T-G to G-A 0.0040
240 259 A-C to G-T 0.0052
1044 1101 T-C to C-T 0.0066
RNA2 130 226 T-G to C-A 0.0102
130 247 T-C to C-T 0.0043
226 247 A-T to G-C 0.0725