Table 3.
Bacterial taxa identified in 100% of the bird samples (assigned by RDP Classifier Program).
| Phylum | Class | Order | Family | Genus | |||||
|---|---|---|---|---|---|---|---|---|---|
| Actinobacteria | 5 | Actinobacteria | 5 | Actinomycetales | 4 | Corynebacteriaceae | 1 | Corynebacterium | 1 |
| Microbacteriaceae | 1 | ||||||||
| Propionibacteriaceae | 1 | Propionibacterium | 1 | ||||||
| Bacteroidetes | 5 | Bacteroidia | 1 | Bacteroidales | 1 | Bacteroidaceae | 1 | Bacteroides | 1 |
| Flavobacteria | 3 | Flavobacteriales | 3 | Flavobacteriaceae | 3 | Chryseobacterium | 1 | ||
| Planobacterium | 1 | ||||||||
| Firmicutes | 17 | Bacilli | 12 | Bacillales | 4 | Bacillaceae | 2 | Anoxybacillus | 1 |
| Staphylococcaceae | 1 | Staphylococcus | 1 | ||||||
| Lactobacillales | 7 | Lactobacillaceae | 1 | Lactobacillus | 1 | ||||
| Leuconostocaceae | 2 | Leuconostoc | 1 | ||||||
| Weissella | 1 | ||||||||
| Streptococcaceae | 3 | Lactococcus | 1 | ||||||
| Streptococcus | 1 | ||||||||
| Clostridia | 4 | Clostridiales | 4 | Clostridiaceae | 1 | Clostridium | 1 | ||
| Veillonellaceae | 2 | Veillonella | 1 | ||||||
| Proteobacteria | 27 | Alpha- proteobacteria | 4 | Rhizobiales | 2 | Methylobacteriaceae | 1 | Methylobacterium | 1 |
| Sphingomonadales | 1 | Sphingomonadaceae | 1 | Sphingomonas | 1 | ||||
| Beta- proteobacteria | 9 | Burkholderiales | 8 | Burkholderiales | 2 | Aquabacterium | 1 | ||
| incertae sedis | Tepidimonas | 1 | |||||||
| Comamonadaceae | 4 | Acidovorax | 1 | ||||||
| Diaphorobacter | 1 | ||||||||
| Schlegelella | 1 | ||||||||
| Oxalobacteraceae | 1 | Janthinobacterium | 1 | ||||||
| Epsilon- proteobacteria | 2 | Campylobacterales | 2 | Campylobacteraceae | 1 | Campylobacter | 1 | ||
| Helicobacteraceae | 1 | Helicobacter | 1 | ||||||
| Gamma- proteobacteria | 11 | Aeromonadales | 1 | Aeromonadaceae | 1 | Aeromonas | 1 | ||
| Enterobacteriales | 4 | Enterobacteriaceae | 4 | Escherichia | 1 | ||||
| Kluyvera | 1 | ||||||||
| Yersinia | 1 | ||||||||
| Pseudomonadales | 3 | Moraxellaceae | 2 | Acinetobacter | 1 | ||||
| Enhydrobacter | 1 | ||||||||
| Pseudomonadaceae | 1 | Pseudomonas | 1 | ||||||
| Xanthomonadales | 2 | Xanthomonadaceae | 2 | Stenotrophomonas | 1 | ||||
Gray boxes indicate the phylotype did not align to any named taxa at that taxonomic rank. Numbers in boxes are the total number of identified phylotypes in that group. Full length gray bar at bottom indicates a phylotype that did not align to any named phylum.