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. 2015 Dec 21;6:1136. doi: 10.3389/fpls.2015.01136

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Copyright © 2015 He, Liu, Zheng, Cui, Shen and Zheng.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Differentially expressed genes of Oryza sativa in response to Cd stress from RNA-seq data. (A) Summary of significant up- and down-regulated genes between two Cd concentration gradient treated roots. (B) Venn diagram analysis showed a total of 1169 differentially expressed genes in different conditions. (C) Heatmap showed expression increased or decreased trend of total differential expressed genes with the rise of Cd concentration after scaling each gene to a mean of 0 and standard deviation of 1. (D) Overlap of differential expressed RAPDB genes from RNA-Seq and Lin et al microarray study. Total number of RAPDB genes was 45,990. The P-value of overlap significant statistical test was 2.2E-16 and 2.2E-16 by Fisher exact test, respectively.