Table 1.

Characteristics of ancestral genes and adjacencies from observed ancestral adjacencies filtered by Boltzmann probability (leftmost column), with different kT values.

	Ancestral genes			Ancestral adjacencies			Syntenic conflicts
Proba.	kT = 0.5	kT = 0.1	kT = 0.01	kT = 0.5	kT = 0.1	kT = 0.01	kT = 0.5	kT = 0.1	kT = 0.01
≥ 0.1	122,593	120,495	120,531	137,133	116,671	116,873	31,415	14,655	14,863
≥ 0.2	121,896	119,792	119,864	130,928	113,835	114,109	26,415	12,631	12,871
≥ 0.3	120,869	118,871	118,913	122,073	110,472	110,676	19,729	10,259	10,471
≥ 0.4	118,240	117,883	117,990	111,224	107,492	107,845	11,569	8,439	8,738
≥ 0.5	113,023	116,476	116,810	100,265	103,963	105,015	5,658	6,578	7,373
≥ 0.6	104,970	114,699	114,902	88,943	100,064	100,511	3,044	5,081	5,387
≥ 0.7	92,647	112,834	112,924	75,063	96,546	96,789	1,363	4,104	4,301
≥ 0.8	75,408	110,272	110,503	58,665	92,181	92,621	492	3,290	3,496
≥ 0.9	45,753	107,769	107,863	34,005	88,132	88,373	65	2,717	2,886
= 1	13	16,470	106,903	7	10,798	87,048	0	0	2,690