Table 2.
Positions of poly-C tracts in the BFR-CA-9557 genome
| Poly C on forward strand | pos. rel. to | ORF location | |||||
|---|---|---|---|---|---|---|---|
| Position | Length | RAST annotation of closest ORF | ATG | STOP | Start | Stop | Strand |
| 442261 | 11 | Putative lipoprotein of ferric iron transporter system | 139 | −3 | 442254 | 442132 | - |
| 1099189 | 10 | hypothetical protein | 739 | −7 | 1099187 | 1098459 | - |
| 1257487 | 9 | Phosphoglycerol transferase | 1728 | −256 | 1257735 | 1255767 | - |
| 1427910 | 9 | Filamentous haemagglutinin domain protein | 1554 | −9 | 1427911 | 1426364 | - |
| 1547848 | 9 | FIG 00469527: hypothetical protein | 637 | −596 | 1548436 | 1547219 | - |
| 1587049 | 8 | hypothetical protein | 679 | −575 | 1587617 | 1586377 | - |
| 1607917 | 9 | FIG 00470049: hypothetical protein | 2305 | 34 | 1607875 | 1605620 | - |
| 1660758 | 9 | CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-) | 64 | −620 | 1661370 | 1660702 | - |
| 1668862 | 8 | CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase (EC 2.4.99.-) | 40 | −1587 | 1670442 | 1668829 | - |
Poly-G/C tracts were searched in the BFR-CA-9557 genome using regular expression describing at least 8 consecutive G/C. The first two columns denote the genome location and length of the expression found. Column 3 shows the RAST annotation of the ORF closest to the homopolymeric stretch. Column 4 and 5 represent the relative position of the stretch to the ORF’s start (4) and Stop codon (5), with negative numbers representing upstream locations. Columns 6 to 8 denote the location and orientation of the ORF