TABLE 1.
Spearman coefficients (Rho), numbers of observations (n) and significance levels (p) for rank correlations of normalized EBV-specific read counts in gastric cancers analyzed by whole genome (WGS), exome, mRNA and miRNA sequencing
| All tumors combined
|
EBV-negative tumors
|
EBV-positive tumors
|
|||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| WGS | Exome | mRNA | miRNA | WGS | Exome | mRNA | miRNA | WGS | Exome | mRNA | miRNA | ||
| WGS | Rho | 1 | 1 | 1 | |||||||||
| n | 77 | 70 | 7 | ||||||||||
| p | |||||||||||||
|
| |||||||||||||
| Exome | Rho | 0.4 | 1 | 0.2 | 1 | 0.3 | 1 | ||||||
| n | 75 | 263 | 68 | 237 | 7 | 26 | |||||||
| p | 0.001 | 0.2 | 0.6 | ||||||||||
|
| |||||||||||||
| mRNA | Rho | 0.8 | 0.4 | 1 | 0.6 | 0.2 | 1 | −0.09 | 0.3 | 1 | |||
| n | 40 | 210 | 237 | 34 | 186 | 213 | 6 | 24 | 24 | ||||
| p | 0.000 | 0.000 | 0.000 | 0.03 | 0.9 | 0.2 | |||||||
|
| |||||||||||||
| miRNA | Rho | 0.5 | 0.2 | 0.5 | 1 | 0.3 | −0.01 | 0.3 | 1 | 0.3 | −0.2 | 0.6 | 1 |
| n | 77 | 261 | 235 | 293 | 70 | 237 | 213 | 269 | 7 | 24 | 22 | 24 | |
| p | 0.000 | 0.000 | 0.000 | 0.02 | 0.9 | 0.000 | 0.5 | 0.4 | 0.01 | ||||