Table 2.
RPKM for common highly up-regulated (Log2fold-change ≥ 5) genes in tomato lines P I114490 and OH 88119 at 6 days post-inoculation (DPI).
| Gene | Function description | PI 114490 | OH 88119 | ||||
|---|---|---|---|---|---|---|---|
| Mockb | 6 DPIb | Fold valuec | Mockb | 6 DPIb | Fold-changec | ||
| Solyc00g174330.2.1 | Pathogenesis related proteina | 6.37 | 11.43 | 5.06 | 2.88 | 9.42 | 6.54 |
| Solyc09g007010.1.1 | Pathogenesis related proteina | 4.69 | 10.02 | 5.33 | 2.63 | 9.17 | 6.54 |
| Solyc00g174340.1.1 | Pathogenesis-related proteina | 8.88 | 14.31 | 5.43 | 5.50 | 12.42 | 6.93 |
| Solyc01g106620.2.1 | Pathogenesis-related proteina | 4.49 | 10.20 | 5.71 | 1.62 | 9.27 | 7.65 |
| Solyc08g080620.1.1 | Osmotin-like proteina | 0 | 5.38 | 7.26 | 0 | 5.05 | 6.73 |
| Solyc08g080650.1.1 | Osmotin-like proteina | 6.43 | 11.47 | 5.03 | 4.39 | 9.75 | 5.36 |
| Solyc08g080670.1.1 | Osmotin-like proteina | 2.62 | 7.77 | 5.15 | 0 | 8.14 | 8.38 |
| Solyc02g082960.2.1 | Endochitinasea | 0 | 3.30 | 6.67 | 0 | 4.37 | 7.54 |
| Solyc02g086700.2.1 | Beta-1 3-glucanasea | 0 | 5.82 | 7.62 | 0 | 6.43 | 10.04 |
| Solyc01g060020.2.1 | Beta-glucanasea | 4.12 | 9.30 | 5.18 | 0 | 7.27 | 7.70 |
| Solyc07g056510.2.1 | Glutathione S-transferasea | 0 | 5.57 | 5.46 | 0 | 2.11 | 5.39 |
| Solyc07g066330.2.1 | NAC domain proteina | 0 | 4.77 | 6.59 | 0 | 1.67 | 5.28 |
| Solyc01g106630.2.1 | Unknown Proteina | 4.31 | 9.83 | 5.51 | 1.39 | 8.91 | 7.53 |
| Solyc12g011150.1.1 | Unknown Protein | 0 | 5.52 | 7.02 | 0 | 3.87 | 5.17 |
| Solyc03g098760.1.1 | Kunitz-type protease inhibitor proteina | 0 | 2.44 | 5.16 | 0 | 4.70 | 5.23 |
| Solyc07g052150.2.1 | Sesquiterpene synthase | 0 | 6.84 | 8.65 | 0 | 4.83 | 6.44 |
| Solyc02g093580.2.1 | Pectate lyase | 0 | 2.14 | 6.16 | 0 | 1.84 | 5.67 |
| Solyc01g059990.2.1 | Serine/threonine-protein phosphatase 7 | 0 | 5.81 | 5.06 | 0 | 3.99 | 6.36 |
| Solyc02g090970.1.1 | Serine/threonine-protein kinase 24 | 0 | 3.28 | 5.83 | 0 | 2.93 | 5.28 |
| Solyc04g074000.2.1 | Receptor like kinase, RLK | 1.66 | 6.80 | 5.14 | 0 | 2.19 | 6.20 |
| Solyc02g071470.2.1 | 1-aminocyclopropane-1-carboxylate oxidase 1 | 0 | 4.71 | 7.55 | 0 | 2.40 | 6.04 |
| Solyc07g049530.2.1 | 1-aminocyclopropane-1-carboxylate oxidase | 4.43 | 9.62 | 5.19 | 1.97 | 7.44 | 5.47 |
| Solyc01g109140.2.1 | Cytochrome P450 | 0 | 5.41 | 8.60 | 0 | 1.17 | 5.17 |
| Solyc11g068940.1.1 | U-box domain-containing 24 | 0 | 3.36 | 7.14 | 0 | 2.17 | 5.75 |
| Solyc04g008100.1.1 | U-box domain-containing | 0 | 3.38 | 5.22 | 0 | 2.46 | 5.10 |
| Solyc06g062330.1.1 | UDP-glucosyltransferase | 0 | 4.63 | 5.34 | 0 | 3.61 | 6.71 |
| Solyc07g052120.2.1 | (−)-germacrene D synthase | 0 | 4.08 | 6.99 | 0 | 3.04 | 5.75 |
| Solyc07g052140.2.1 | (−)-germacrene D synthase | 0 | 7.61 | 7.71 | 0 | 6.45 | 7.66 |
| Solyc08g029000.2.1 | Lipoxygenase | 0 | 6.19 | 6.70 | 0 | 1.96 | 5.58 |
| Solyc08g068870.2.1 | Aspartic proteinase nepenthesin-1 | 2.28 | 7.35 | 5.07 | 0 | 5.31 | 5.38 |
| Solyc12g044950.1.1 | Omega-6 fatty acid desaturase | 0 | 2.68 | 5.04 | 0 | 3.46 | 6.63 |
| Solyc12g049030.1.1 | Fatty acid desaturase | 0 | 5.04 | 5.68 | 0 | 3.04 | 6.49 |
a
The representative genes are associated with “response to stimulus” according to Gene Ontology classification.
b
the value of RPKM.
c
the value of Log2(fold-change).