Table 5.

Differentially expressed genes in the common enriched KEGG pathway “Plant-pathogen interaction”(ko 04626) in tomato lines PI 114490 and OH 88119 at 6 h post-inoculation (HPI) and 6 days post-inoculation (DPI).

Gene	Homologous protein in KEGG	PI 11449					OH 88119
		RPKM			Log2Fold-changea		RPKM			Log2Fold-changea
		Mock	6 HPI	6 DPI	6 HPI vs. Mock	6 DPI vs. Mock	Mock	6 HPI	6 DPI	6 HPI vs. Mock	6 DPI vs. Mock
Solyc03g113390.2.1	CPK	7.25	7.21	38.92	−0.008	2.42	8.62	6.89	16.01	−0.32	0.89
Solyc06g065380.2.1	CPK	3.06	4.83	0.68	0.66	−2.15	3.17	5.97	1.86	0.91	−0.76
Solyc05g050350.1.1	CNGF	0.25	0	2.74	0	3.41	0.09	0.11	0.88	0.26	3.16
Solyc10g081170.1.1	CALM	336.89	336.1	1391.1	−0.003	2.05	189.18	336.69	387.5a	0.83	1.03
Solyc03g118810.1.1	CML	83.01	14.98	235.87	−2.46	1.51	14.15	8.74	96.89a	−0.69	2.77
Solyc06g068960.1.1	CML	31.84	30.13	161.84	−0.07	2.35	13.69	18.07	21.85	0.39	0.67
Solyc10g079420.1.1	CML	41.93	25.34	257.87	−0.72	2.62	19.58	23.48	131.57a	0.26	2.75
Solyc02g094000.1.1	CML	3.04	0	32.47	−3.65	3.42	0.49	0	11.18a	0	4.49
Solyc03g044900.2.1	CML	5.19	6.71	25.07	0.36	2.27	8.34	10.58	6.06	0.34	−0.46
Solyc06g073830.1.1	CML	0.66	0	19.27	0	4.85	1.147	0	1.71	0	0.58
Solyc11g071740.1.1	CML	5.19	0.34	74.57	−3.93	3.84	4.20	10.42	18.34	−3.32	2.13
Solyc11g071760.1.1	CML	0	0	8.34	0	5.75	1.42	0	2.66	0	0.90
Solyc09g014990.2.1	WRKY33	2.52	0.11	28.48	−4.43	3.50	0.84	0.14	12.26	−2.54	3.86
Solyc06g036290.2.1	HSP90	16.45	2.76	70.45	−2.57	2.09	32.76	2.02	18.11	−4.0	−0.85
Solyc07g042170.2.1	JAZ	15.32	10.98	69.14	−0.48	2.17	15.35	13.32	60.44	−0.20	1.98
Solyc12g009220.1.1	JAZ	3.41	7.33	75.82	1.10	4.47	6.43	7.71	33.47	0.26	2.38

^aSignificant difference (FDR ≤ 0.001 and the absolute value of Log₂ fold-change ≥ 2) were shown in boldface.