Table 1.
Region Amplified | Primer Binding Region a | Primer Sequence (5'–3') | PCR Annealing Temperature | Amplified Size | SSCP Condition |
---|---|---|---|---|---|
Region-1 | 198617873_198617893 | F: TTCCTGCTTCTGATCTTGACC | 58 °C | 388 bp | 300 V, 14%, 17 °C |
198618239_198618260 | R: CAGCCTAGAAATTGAATCAGTC | ||||
Region-2 | 198627771_198627789 | F: ACAGCGTGGATCTGGGTTC | 62 °C | 390 bp | 200 V, 14%, 32.5 °C |
198628140_198628159 | R: CACAATTCACTTTCGGCTGC | ||||
Region-3 | 198628889_198628909 | F: GGTCTTCTTGTTCTCTAGGTC | 58 °C | 391 bp | 200 V, 12%, 20 °C |
198629260_198629279 | R: TGGTCCACGTTCTGGTTCTG | ||||
Region-4 | 198629237_198629256 | F: TGCTCTTCACCCACGACCAG | 58 °C | 373 bp | 200 V, 14%, 26 °C |
198629583_198629605 | R: GTCCTGCGAACATAGTATATC | ||||
Region-5 | 198629532_198629553 | F: GGATTCTGAACATCATTCATTC | 58 °C | 455 bp | 390 V, 14%, 5 °C |
198629967_198629986 | R: CAGATGAGTTGGTGGGAGAC |
a The primer binding position is given relative to the ovine genome sequence (NC_019458.1).