Table 2.

Regions of detected recombination in the whole genome alignment of all strains

Event	IAPAR 306 Coordinates	Alignment Coordinates	IAPAR 306 Start Gene	IAPAR 306 End Gene	Strain Presence	Putative Origin	Island
1	51959-65492	52850-66390	XAC0042	XAC0053	Aw	X. citri pv.bilvae
2	214827-217043	219088-221270	XAC0174	XAC0176	JM35-2, JF90-2	Unknown
3	243703-265596	248213-273302	XAC0198	XAC0217	Aw	X. citri pv.bilvae	Island1
4	1253042-1259543	1272074-1278440	XAC1101	XAC1107	A*	Unknown	Island2
5	1729051-1743732	1758692-1774868	XAC1497	XAC1509	Aw	Unknown	Island3
6	2931468-2932633	3000594-3001946	XAC2505	XAC2506	LE3-1, LE20-1	Unknown
7	3256265-3256278	3344395-3344409	Intergenic	Intergenic	JJ10-1, C40	Unknown
8	3525240-3525417	3615434-3615613	XAC3016	XAC3016	JS581, JS582, JS584, JK48, JK2-10	Unknown
9	3538019-3542103	3629086-3634840	XAC3028	XAC3029	JM35-2	Unknown
10	3839344-3842570	3940513-3945476	XAC3259	XAC3262	LB302, NCPPB 3218	Unknown
11	3850723-3851839	3954394-3955620	XAC3269	XAC3269	JJ238-24, LD71a	Unknown
12	3867931-3872268	3974477-3979351	XAC3288	XAC3293	NCPPB 3607	Unknown
13	3868626-3877708	3975273-3986173	XAC3289	XAC3298	LG115	Unknown
14	3872787-3872972	3980062-3980250	XAC3294	XAC3294	NCPPB 3607, JK143-9, JK143-11, LD71a, JJ238-24	Unknown
15	3876659-3877403	3985023-3985867	XAC3298	XAC3298	LB302, X2003-3218	Unknown
16	4257584-4467356	4370989-4598311	XAC3590	XAC3797	JJ238-10, LB100-1, CFBP 2852, JW160, NCPPB 3610, C40, JJ10-1, LMG 9322, JK4-1, FDC 217, IAPAR 306, FDC 1083, LC80, LG117	X. citri pv.bilvae
17	4257584-4414966	4370989-4541201	XAC3590	XAC3740	LG98	X. citri pv.bilvae
18	4364984-4366535	4490348-4491900	XAC3687	XAC3688	LG98	X. citri pv.bilvae
19	4952518-4988729	5094257-5137776	XAC4204	XAC4227	Aw	X. citri pv.bilvae	Island4
20	4965286-4969165	5113255-5117325	XAC4213	XAC4213	A*	Unknown	Island4
21	5004702-5016321	5154088-5165863	XAC4239	XAC4250	Aw	X. citri pv.bilvae