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. 2015 Dec 23;16:1098. doi: 10.1186/s12864-015-2310-x

Table 3.

Gene islands differentially present or absent across pathotypes

Island A Aw A* Note IAPAR 306 gene X2003-3218 (Aw) gene LD71a (A*) gene Gene name Recombination
Island1 + - + Absent in Aw XAC0211 XAC71A_110067 gloA Event 3
- + - Unique to Aw XAC3218_110003 avrGf1 Event 3
- + - Unique to Aw XAC3218_110004 Event 3
Island2 + + - Absent in A* XAC1101 XAC3218_260032 Event 4
- - + Unique to A* XAC71A_230028 Event 4
- - + Unique to A* XAC71A_230029 ccdB Event 4
- - + Unique to A* XAC71A_230030 Event 4
- - + Unique to A* XAC71A_240006 Event 4
- - + Unique to A* XAC71A_240007 Event 4
- - + Unique to A* XAC71A_240008 Event 4
- - + Unique to A* XAC71A_240009 Event 4
Island3 + + - Absent in A* XAC1492 XAC3218_380022
+/− + - Absent in A* XAC3218_390001
+ + - Absent in A* XAC1493 XAC3218_390002
+ + - Absent in A* XAC1494 XAC3218_390003 orf2
+/− + - Absent in A* XAC3218_390004
+/− + - Absent in A* XAC3218_390005
+ + - Absent in A* XAC1495 XAC3218_390006 xrvA
+/− + - Absent in A* XAC3218_390007
+ + - Absent in A* XAC1496 XAC3218_390008
+ + - Absent in A* XAC1497 XAC3218_390009 Event 5
+/− + - Absent in A* XAC3218_390010 Event 5
+/− + - Absent in A* XAC3218_390011 Event 5
+ + - Absent in A* XAC1499 XAC3218_390012 Event 5
+ + - Absent in A* XAC1500 XAC3218_390014 Event 5
+/− + - Absent in A* XAC3218_390015 Event 5
+/− + - Absent in A* XAC3218_390016 Event 5
+/− + - Absent in A* XAC3218_390017 Event 5
+/− + - Absent in A* XAC3218_390018 Event 5
+ + - Absent in A* XAC1501 XAC3218_400002 Event 5
+ + - Absent in A* XAC1502 XAC3218_400003 Event 5
+ + - Absent in A* XAC1503 XAC3218_400004 Event 5
+ + - Absent in A* XAC1506 XAC3218_400005 Event 5
+/− + - Absent in A* XAC3218_400006 Event 5
+/− + - Absent in A* XAC3218_400007 Event 5
+ + - Absent in A* XAC1507 XAC3218_400008 mobL Event 5
+ +/− - Absent in A* XAC1508 XAC3218_400010 Event 5
+ +/− - Absent in A* XAC1509 XAC3218_400011 Event 5
Island4 + - + Absent in Aw XAC4205 XAC71A_950084 Event 18
+ - +/− Absent in Aw XAC4206 Event 18
+ - + Absent in Aw XAC4209 XAC71A_960001 cvaB Event 18
- ψ - Unique to Aw XAC3218_960285 Event 18
- ψ - Unique to Aw XAC3218_960286 Event 18
- + - Unique to Aw XAC3218_970001 Event 18
- ψ - Unique to Aw XAC3218_970002 Event 18
- ψ - Unique to Aw XAC3218_970003 Event 18

+ present in all strains of a pathotype; − absent in all strains of a pathotype; +/− present in some strains of a pathotype; ψ putative pseudogene