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. Author manuscript; available in PMC: 2015 Dec 24.
Published in final edited form as: Methods Enzymol. 2015 Jan 5;552:165–184. doi: 10.1016/bs.mie.2014.10.006

Table 2.

Seahorse Bioanalyzer program

Steps Whole cells Permeabilized cells
1 Mix 3 min Loop (2X) START
Mix 1 min
Wait 3 min

2 Loop (3X) START
Loop (3X) START
Mix 1 min
Mix 1 min
Measure 3 min
Measure 3 min
Mix 1 min Mix 30 s

3 Loop END Loop END

4 Inject Port A: Substrate Inject Port A: 100 μg/ml saponin

5 Loop (3X) START
Loop (5X) START
Mix 1 min
Mix 1 min
Measure 3 min
Measure 3 min
Mix 1 min Mix 1 min

6 Loop END Loop END

7 Inject Port B: 1 μM oligomycin Inject Port B: Substrate

8 Loop (3X) START
Loop (2X) START
Mix 1 min
Mix 1 min
Measure 3 min
Measure 3 min
Mix 1 min Mix 1 min

9 Loop END Loop END

10 Inject Port C: 1 μM FCCP Inject Port C: 1 μM FCCP

11 Loop (3X) START
Loop (2X) START
Mix 1 min
Mix 1 min
Measure 3 min
Measure 3 min
Mix 1 min Mix 1 min

12 Loop END Loop END

13 Inject Port D: 5 μM antimycin A Inject Port D: 5 μM antimycin A

14 Loop (3X) START
Loop (2X) START
Mix 1 min
Mix 1 min
Measure 3 min
Measure 3 min
Mix 1 min Mix 1 min

15 Loop END Loop END