Table 3.

Likelihood analysis of the models in the Fitmodel program for the TET gene sequence data.

Parameter	M0	M3			M3 + S1			M3 + S2
TET1
LnL	−87,135.73	−85,706.34			−85,517.88			−85,482.33
ω1 ω2 ω3	0.39	0.04	0.35	0.90	0.00	0.42	1.21	0.01	0.23	1.34
p1 p2 p3		0.25	0.48	0.26	0.37	0.41	0.22	0.28	0.46	0.25
R12 R13 R23					1.54	1.54	1.54	0.71	0.2	3.34
TET2
LnL	−75,677.72	−74,276.11			−74,103.47			−74,071.62
ω1 ω2 ω3	0.35	0.04	0.36	0.94	0.00	0.42	1.24	0.005	0.30	1.54
p1 p2 p3		0.31	0.50	0.19	0.39	0.44	0.17	0.35	0.48	0.17
R12 R13 R23					1.6	1.6	1.6	0.74	0.33	4.34
TET3
LnL	−48,719.65	−47,256.37			−47,176.26			−47,169.96
ω1 ω2 ω3	0.11	0.01	0.19	0.75	0.00	0.28	0.98	0.003	0.22	1.07
p1 p2 p3		0.62	0.28	0.10	0.69	0.23	0.08	0.68	0.23	0.09
R12 R13 R23					2.14	2.14	2.14	1.04	2.27	9.96