Table 4.
Summary of simple sequence repeat (SSR) types in the Spindasis takanosis transcriptome.
Motif Length | Repeat Numbers | ||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | ≥21 | Number # | % $ | |
Di | 272,076 | 31,299 | 4624 | 1078 | 476 | 291 | 211 | 149 | 142 | 140 | 33 | 46 | 62 | 57 | 38 | 30 | 31 | 17 | 101 | 310,901 | 79.61 |
Tri | 59,652 | 5834 | 1249 | 416 | 215 | 111 | 16 | 21 | 16 | 11 | 4 | 5 | 4 | 4 | 8 | 4 | 3 | 5 | 26 | 67,604 | 17.31 |
Tetra | 7734 | 859 | 295 | 134 | 10 | 9 | 6 | 11 | 8 | 3 | 8 | 6 | 7 | 2 | 2 | 2 | 1 | 0 | 1 | 9098 | 2.33 |
Penta | 1687 | 185 | 49 | 6 | 11 | 6 | 5 | 3 | 1 | 4 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 1960 | 0.50 |
Hexa | 613 | 77 | 5 | 2 | 3 | 2 | 1 | 1 | 3 | 0 | 1 | 2 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 738 | 0.019 |
Hepta | 113 | 17 | 2 | 5 | 3 | 1 | 3 | 1 | 2 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 148 | 0.003 |
Octa | 73 | 4 | 10 | 2 | 0 | 0 | 2 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 93 | 0.002 |
Total | 341,948 | 38,275 | 6234 | 1643 | 718 | 420 | 244 | 188 | 172 | 158 | 47 | 59 | 74 | 64 | 50 | 36 | 35 | 23 | 128 | 390,516 | 100.00 |
# Number of SSRs detected in the unigenes; $ Relative percent of SSRs with different motif lengths among the total SSRs.