Table 1. Parameters describing the stability and structure of EphA3 unliganded dimers.
Kdiss is the dissociation constant (receptors/μm2), ΔG is the dimerization free energy, Ẽ is the intrinsic FRET efficiency and d is the calculated distance between the fluorescent proteins in the EphA3 dimers. Kdiss and Ẽ are determined from a fit of the dimerization model to the FRET data and the uncertainties are the 95% confidence intervals from the fit. ΔG and d are calculated using eqns (6) and (4) respectively. Deletion of the EphA3 SAM domain increases the dissociation constant by an order of magnitude, corresponding to a dimerization free energy change of −1.3±0.3 kcal/mole.
Kdiss (rec/μm2) | ΔG (kcal/mol) | Ẽ | d (Å) | |
---|---|---|---|---|
EphA3 | 55±16 | −5.8±0.2 | 0.60±0.03 | 50±1 |
EphA3 ΔSAM | 471±130 | −4.5±0.2 | 0.49±0.04 | 54±1 |