TABLE 1.
Strain or plasmid | Genetic description | Source |
---|---|---|
E. coli strains | ||
DH5α | F- Φ80lacZΔM15Δ (lacZYA-argF) U169 recA1 | Invitrogen |
BL21(DE3) | ΔompT gal dcm lon hsdSB (rB− mB−)λ (DE3) | (50) |
A38a | C600 lepB (N274K) | (5) |
AD202 | ompT1000::kan, KmR | (51) |
Plasmids | ||
E. coli | ||
pLEPB1-wt | pET23 (tag-His6)lepB, AmpR | (32) |
pLEPB(N274K) | pET23 (tag-His6)lepB (N274K), AmpR | (9) |
pLEPB1-mutb | pET23 (tag-His6)lepB(mutb), AmpR | This work |
pColD1c | pUC18 cda-cdi-cdl, (EcoRI and BamHI), AmpR | (52) |
pColDIc | pET11a cda-cdi(tag-His6), (NdeI/BamHI), AmpR | (9) |
pColDI-mutc,d | pET11a cda(mutd)-cdi(tag-His6), (NdeI/BamHI), AmpR | This work |
pColDI(H611A)c | pET11a cda-cdi(H611A; tag-His6), (NdeI/BamHI), AmpR | This work |
pColD-CD(Glu-314--Met-590) | pET11a cda (tag-H6)Glu-314--Met-590, (NdeI/BamHI), AmpR | (9) |
pColD-A(Glu-314--Leu-697) | pET11a cda(Glu-314--Leu-697)-cdi(tag-His6), (NdeI/BamHI), AmpR | This work |
pColD-B(Met-1--Met-590) | pET11a cda (tag-His6)Met-1--Met-590, (NdeI/BamHI), AmpR | This work |
pColD-E(Met-1--Met-590) | pACYC-Duet1 cda Met-1--Met-590, (NdeI/BglII), CmR | This work |
pColD-Del(1–14) | pET11c truncated cda(tag-His6), (NdeI/BamHI), AmpR | This work |
K. pneumoniae | ||
pMC04-KlebC2e | pBSK+ kcp-kca-kci (BamHI), AmpR | (31) |
pKlebCI | pACYC-Duet1 kca-kci(tag-His6), (NdeI/BglII), CmR | This work |
K. oxytoca | ||
pKlebDf | pBSK+ kdp-kda-kdi, (EcoRI), AmpR | (31) |
a Strain sensitive to pore-forming colicin B but resistant to tRNase colicin D.
b Mutations in LepB: N274A, N274D, N277A, N277K, G272A, or A279G.
c cda and cdi are genes encoding colicin D and its immunity protein; cdl encodes the bacteriocin-release protein.
d Mutations in colicin D: G413A, A422D, A422V, G423D, S426A, P430A, G431D, G431A, R432A.
e kca and kci are genes encoding klebicin C and its immunity protein; kcp and kdp are genes for phage tail fiber-like proteins in Klebsiella strains.
f kda and kdi are genes encoding klebicin D and its immunity protein.