Fig. 3.

Simple p-distance neighbor-joining tree of the aligned 1,552 exons of the original 52 transcriptome taxa and the subsequent 20 representative sequences (labeled SR). These are color-coded by the four kits into which they were combined. Taxa contributing to a representative are indicated by the first number in the label and gray brackets to the right. Note that kit 3 contains the clade 8 representative even though it is phylogenetically closer to the kit 2 sequences. This tree is essentially the same as the full transcriptome analysis in O’Hara et al. (2014).