Table 4.

USAMRIID-WRAIR pipeline reanalysis for pathogen reads from Sample 28, 1164. Pathosphere’s ability to host multiple pipelines was tested using a pipeline designed by USAMRIID and WRAIR to analyze datasets from samples 28 and 1164. The reanalysis resulted in viral hits against the correct agent (sample 28) and against multiple viruses (sample 1164) with one correctly identified as a nearest neighbor

Reanalyzed Sample	Read length	NN hit
Sample 28	152	GB virus D strain 93 polyprotein precursor, gene, partial cds
692 total hits
	231	GB virus D strain 93 polyprotein precursor, gene, partial cds
3 viral hits
	246	GB virus D strain 93 polyprotein precursor, gene, partial cds
Sample 1164	171	Gray fox amdovirus NS1, NS2, NS3, VP1, and VP2 genes, complete_cds
4621 total hits
24 viral hits