Table 2.
MapCard ID | Fa | Input mapsb (theoretical genome coverage) | Average Argus quality score | Average DNA molecule size (kb) | Average # of fragments | Average fragment size (kb) | OPTIMA alignment rate | Yield (genome coverage)c | Average digestion ratec | Average false/ extra cut ratec | Ratio small missing fragments (≤2 kb)c |
---|---|---|---|---|---|---|---|---|---|---|---|
21157LB | (r) | 73365 (7.2×) | 0.50 | 295 | 18 | 16.5 | 0.253 | 2.0× | 0.659 | 0.736 | 0.139 |
(s) | 38483 (4.7×) | 0.53 | 368 | 22 | 17.0 | 0.357 | 1.7× | 0.650 | 0.733 | 0.133 | |
21159LB | (r) | 75761 (7.6×) | 0.47 | 300 | 17 | 17.4 | 0.190 | 1.6× | 0.628 | 0.723 | 0.129 |
(s) | 41236 (5.1×) | 0.50 | 370 | 21 | 17.8 | 0.268 | 1.3× | 0.618 | 0.718 | 0.124 | |
21431LB | (r) | 93896 (8.6×) | 0.52 | 274 | 17 | 15.8 | 0.200 | 1.9× | 0.676 | 0.773 | 0.187 |
(s) | 43667 (5.1×) | 0.54 | 348 | 21 | 16.3 | 0.303 | 1.5× | 0.665 | 0.768 | 0.184 | |
21443LB | (r) | 66857 (6×) | 0.51 | 271 | 17 | 15.8 | 0.192 | 1.3× | 0.674 | 0.771 | 0.175 |
(s) | 29991 (3.5×) | 0.53 | 346 | 21 | 16.3 | 0.292 | 1.0× | 0.661 | 0.772 | 0.168 | |
Total | (r) | 309879 (29.4×) | 0.50 | 285 | 17 | 16.4 | 0.209 | 6.8× | 0.660 | 0.751 | 0.158 |
(s) | 153377 (18.3×) | 0.52 | 359 | 21 | 16.9 | 0.310 | 5.5× | 0.649 | 0.747 | 0.152 |
ar: inclusion of DNA molecules with ≥10 fragments and ≥150 kb in length; s: inclusion of DNA molecules with ≥12 fragments and ≥250 kb in length
bfragmented DNA molecules
cof OPTIMA aligned data