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File input/output in GENESIS. (a) Scheme in standard MD simulations. PDB, Protein Data Bank; PSF, Protein Structure File; PAR, Parameter; RST, restart file. Coordinates and velocities are generated in the standard DCD file format. (b) Scheme in REMD simulations. REM, parameter index file. (c) Scheme in large-scale MD simulations. PRST, parallel restart files; PCRD, parallel coordinates files.
