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. 2015 Dec 30;10(12):e0145967. doi: 10.1371/journal.pone.0145967

Table 1. Primers for PCR amplification of various segments of the UGT1A1 gene.

Gene region amplified Sequence (5’ to 3’) PCR product size (bp) Reference
Promoter region (for fragment length analysis) 6-FAM—TAA CTT GGT GTA TCG ATT GGT TTT TG 90 [9]
ACA GCC ATG GCG CCT TTG CT
Promoter region (for sequencing) AAG TGA ACT CCC TGC TAC CTT 253 [10]
CCA CTG GGA TCA ACA GTA TCT
Regulatory region CTA GCC ATT CTG GAT CCC TTG 367 [9]
TTT TGA GAT CTG AGT TCT CTT CAC CTC
Exon 1* TAT AAG TAG GAG AGG GCG AAC C 588 [9]
TCA AAT TCC AGG CTG CAT G
GGC CTC CCT GGC AGA AAG 617 [9]
ATG CCA AAG ACA GAC TCA AAC C
Exon 2 TCT ATC TCA AAC ACG CAT GCC 374 [9]
GGC AGG GAA AAG CCA AAT CTA
Exon 3 TTG CCA GTC CTC AGA AGC CTT 423 [9]
ATG CCC TTG CAG AAA TTT GC
Exon 4 TGC AAG GGC ATG TGA GTA ACA 553 [9]
AAG CCA AGA TTG CAC CAC TG
Exon 5 GAG GAT TGT TCA TAC CAC AGG 436 [8]
TGA ATT TAA CAC TGA TTC TGT T
Primers for generating pCAS2 mini-gene constructs
UGT1A1-Ex3-BamHIF GCATGCGGATCCCGGAAGTTGCCAGTCCTCAG 475
UGT1A1-Ex3-MluIR CTAAGTACGCGTGTGTTACTCACATGCCCTTGC
Primers for pCAS2 RT-PCR analysis
pCAS_P1_F CTCCGCAGGTCCGCT [11]
pCAS_P2_R ATTGGTTGTTGAGTTGGTTGTC

6-FAM = 6-carboxyfluorescein

*Exon 1, being long, was amplified as two overlapping amplicons; the sequences obtained from these were then merged