Table 1. Primers for PCR amplification of various segments of the UGT1A1 gene.
Gene region amplified | Sequence (5’ to 3’) | PCR product size (bp) | Reference |
---|---|---|---|
Promoter region (for fragment length analysis) | 6-FAM—TAA CTT GGT GTA TCG ATT GGT TTT TG | 90 | [9] |
ACA GCC ATG GCG CCT TTG CT | |||
Promoter region (for sequencing) | AAG TGA ACT CCC TGC TAC CTT | 253 | [10] |
CCA CTG GGA TCA ACA GTA TCT | |||
Regulatory region | CTA GCC ATT CTG GAT CCC TTG | 367 | [9] |
TTT TGA GAT CTG AGT TCT CTT CAC CTC | |||
Exon 1* | TAT AAG TAG GAG AGG GCG AAC C | 588 | [9] |
TCA AAT TCC AGG CTG CAT G | |||
GGC CTC CCT GGC AGA AAG | 617 | [9] | |
ATG CCA AAG ACA GAC TCA AAC C | |||
Exon 2 | TCT ATC TCA AAC ACG CAT GCC | 374 | [9] |
GGC AGG GAA AAG CCA AAT CTA | |||
Exon 3 | TTG CCA GTC CTC AGA AGC CTT | 423 | [9] |
ATG CCC TTG CAG AAA TTT GC | |||
Exon 4 | TGC AAG GGC ATG TGA GTA ACA | 553 | [9] |
AAG CCA AGA TTG CAC CAC TG | |||
Exon 5 | GAG GAT TGT TCA TAC CAC AGG | 436 | [8] |
TGA ATT TAA CAC TGA TTC TGT T | |||
Primers for generating pCAS2 mini-gene constructs | |||
UGT1A1-Ex3-BamHIF | GCATGCGGATCCCGGAAGTTGCCAGTCCTCAG | 475 | |
UGT1A1-Ex3-MluIR | CTAAGTACGCGTGTGTTACTCACATGCCCTTGC | ||
Primers for pCAS2 RT-PCR analysis | |||
pCAS_P1_F | CTCCGCAGGTCCGCT | [11] | |
pCAS_P2_R | ATTGGTTGTTGAGTTGGTTGTC |
6-FAM = 6-carboxyfluorescein
*Exon 1, being long, was amplified as two overlapping amplicons; the sequences obtained from these were then merged