Table 1.
Nucleotide homology of the Cot-1 DNA fraction clones of Semaprochilodus insignis to known sequences in public databases. BLASTN results and their respective identities are displayed.
| Isolate clone | Repetitive sequences | Similarity | Identities |
|---|---|---|---|
| Sin1 | DNA transposon | EnSpm-3_DR (RepBase/GIRI*) | 70% |
| Sin2 | Microsatellite | Cyprinus carpio (GenBank JN756399.1) | 92% |
| Sin3 | Microsatellite |
Hypostomus
gymnorhynchus (GenBank HM545164.1) |
83% |
| Sin4 | Non-LTR retrotransposon | HERO-2_DR (RepBase/GIRI*) | 78% |
| Sin5 | Microsatellite/Retrotransposon |
Colossoma
macropomum (HM579956.1) SINE_2 (RepBase/GIRI*) |
79%–75% |
| Sin6 | DNA transposon | Mariner/Tc1 (RepBase/GIRI*) | 76% |
| Sin7 | DNA transposon | ERV2 Endogenous Retrovirus (RepBase/GIRI*) | 77% |
| Sin8 | Microsatellite | Cyprinus carpio (GenBank JN733372.1) | 100% |
| Sin9 | Non-LTR retrotransposon | Rex1 (RepBase/GIRI*) | 73% |
| Sin10 | Microsatellite | Cyprinus carpio (GenBank JN771242.1) | 91% |
| Sin11 | DNA transposon | Labeo rohitaTc1-like (GenBank AY083617.1) | 77% |
| Sin12 | Microsatellite | Cyprinus carpio (GenBank JN761177.1) | 100% |
| Sin13 | Microsatellite | Hippoglossus hippoglossus (GenBank AJ270780.1) | 89% |
| Sin14 | DNA transposon | Helitron-2_DR (RepBase/GIRI*) | 83% |
| Sin15 | Microsatellite | Cyprinus carpio (GenBank JN785563.1) | 83% |
| Sin16 | Microsatellite | Salmo salar CAG-repeat (GenBank Y11457.1) | 87% |
| Sin17 | Microsatellite | Eleutheronema tetradactylum (GenBank AB697177.1) | 80% |
| Sin18 | Microsatellite | Oncorhynchus mykiss (GenBank AY039630.1) | 86% |
| Sin20 | Microsatellite | Prochilodus lineatus (GenBank AY285824.1) | 84% |
| Sin21 | Microsatellite | Cyprinus carpio (GenBank JN745523.1) | 89% |
| Sin22 | Microsatellite | Cyprinus carpio (GenBank JN757227.1) | 90% |
| Sin23 | Microsatellite | Cyprinus carpio (GenBank JN737559.1) | 92% |
| Sin38 | Microsatellite | Cyprinus carpio (GenBank JN755429.1) | 100% |
| Sin39 | Microsatellite | Cyprinus carpio (GenBank JN744936.1) | 92% |
| Sin41 | Microsatellite | Cyprinus carpio (GenBank JN746351.1) | 95% |
| Sin42 | Microsatellite | Cyprinus carpio (GenBank JN757934.1) | 81% |
| Sin48 | Microsatellite | Cyprinus carpio (GenBank JN731077.1) | 70% |
*
Database Repbase (http://www.girinst.org)