Table 2.
Nucleotide homology of the Cot-1 DNA fraction clones of Semaprochilodus taeniurus to known sequences in public databases. BLASTN results along with their respective identities are displayed.
| Isolate clone | Repetitive sequences | Similarity | Identities |
|---|---|---|---|
| Ste1 | Microsatellite | Prochilodus mariae (GenBank JF832400.1) | 87% |
| Ste2 | Microsatellite | Epinephelus fuscoguttatus (GenBank GU799242.1) | 82% |
| Ste3 | Microsatellite | Cyprinus carpio (GenBank JN779618.1) | 96% |
| Ste4 | DNA transposon | Tc1_FR2(RepBase/GIRI*) | 82% |
| Ste5 | Microsatellite | Cyprinus carpio (GenBank JN756719.1) | 87% |
| Ste6 | Microsatellite | Cynoglossus semilaevis (GenBank EU907150.1) | 96% |
| Ste7 | Microsatellite | Prochilodus mariae (GenBank JF832400.1) | 84% |
| Ste8 | Non-LTR retrotransposon | L2-2_DRe (RepBase/GIRI*) | 86% |
| Ste9 | Microsatellite | Cyprinus carpio (GenBank JN21488.1) | 96% |
| Ste10 | Microsatellite | Cyprinus carpio (GenBank JN731879.1) | 100% |
| Ste11 | Microsatellite | Cyprinus carpio (GenBank JN28181.1) | 87% |
| Ste12 | Microsatellite | Prochilodus mariae (GenBank JF832400.1) | 80% |
| Ste13 | Microsatellite | Salmo salar (GenBank AJ402727.1) | 100% |
| Ste14 | Microsatellite | Cyprinus carpio (GenBank JN80674.1) | 95% |
| Ste15 | Microsatellite | Cyprinus carpio (GenBank JN721488.1) | 96% |
| Ste16 | Adeovirus | Bovine Adenovirus type2 | 99% |
| Ste17 | Non-LTR retrotransposon | SINE3/ 5S (RepBase/GIRI*) | 82% |
| Ste18 | Microsatellite | Brycon amazonicus (GenBank JQ993450.1) | 89% |
| Ste19 | Microsatellite | Cyprinus carpio (GenBank JN759566.1) | 87% |
| Ste20 | Non-LTR retrotransposon | Rex1-9_XT (RepBase/GIRI*) | 75% |
| Ste21 | Non-LTR retrotransposon | L2 | 82% |
*
Database Repbase (http://www.girinst.org)