Table 1.
The gene name, symbol, ABI Taqman Assay Identifier (ID) and NCBI reference sequence of the primers used in this study.
| Gene Name | Gene Symbol | Assay ID | NCBI Gene Reference |
|---|---|---|---|
| Serotonin regulation | |||
| Fifth ewing variant (PET1 in rodent) | FEV | Rh02872593 | XM_001095962.2 |
| Tryptophan hydroxylase 2 | TPH2 | Rh02788839 | NM_001039946.1 |
| Serotonin reuptake transporter | SLC6A4 | Rh02787892 | NM_001032823.1 |
| Serotonin receptor 1A | 5HT1A | Rh02902683 | NM_001198700.1 |
| Corticotropin releasing hormone receptor type 1 | CRHR1 | Rh02787591 | NM_001032803.1 |
| Corticotropin releasing hormone receptor type 2 | CRHR2 | Rh01120857 | XM_001085987.2 |
| Urocortin 1 (stresscopin) | UCN1 | Rh03986716 | NM_001265661.1 |
| Synapse assembly | |||
| Neuroligin 3 | NLGN3 | Rh03986723 | XM_001111843.1 |
| Neurotrophic tyrosine kinase, receptor, type 2, trk-B | NTRK | Rh02831788 | NM_001261297.1 |
| Synaptosomal-associated protein, 25kDa | SNAP25 | Rh03043048 | NM_001032864.1 |
| Neural cell adhesion molecule 1 | NCAM1 | Rh00354742 | XM_001083366.2 |
| Glutamate Receptors | |||
| Glutamate [NMDA2A] receptor subunit epsilon 1 | GRIN2A | Rh03986722 | XM_001105525.1 |
| Glutamate receptor, ionotropic, AMPA 2 | GRIA2 | Rh02790124 | NM_001039946.1 |
| Glutamate receptor, metabotropic 1 | GRM1 | Rh01068380 | XM_001085942.1 |
| DNA Repair | |||
| Nibrin, part of double strand break repair complex | NBS1 | Rh01039845 | XM_001085033.1 |
| Nth endonuclease III-like 1, DNA N-glycosylas | NTHL | Rh00959765 | XM_001082772.2 |
| Ligase IV, DNA double strand break repair | LIG4 | Rh04269856 | XM_001084107 |
| General transcription factor IIH, polypeptide 5, subunit of TFIIH | GTF2H5 | Rh02792678 | NM_001190969.1 |
| RAD23 homolog A, involved in nucleotide excision repair (NER) | RAD23A | Rh00908422 | XM_001110103.2 |
| Apurinic/apyrimidinic endonuclease 1 | APEX1 | Rh02793202 | XM_001090240.2 |
| Proliferating cell nuclear antigen, BER gap filling | PCNA | Rh02806147 | XM_001115746.2 |
| Split hand/foot malformation (ectrodactyly) type 1 | SHFM1 | Rh02860294 | XM_001091523.2 |
| Chaperones | |||
| Heat shock protein 90kD | HSP90B1 | Rh02790147 | NM_001195524.1 |
| Heat shock protein 60kD protein1 | HSPD1 | Hs01036753 | NM_002156.4 |
| Heat shock protein 27kD protein 1 | HSPB1 | Rh02980144 | XM_001109274.2 |
| Ubiquinases | |||
| Ubiquitin-like modifier activating enzyme 1 | UBE1 | Hs01566989 | NM_024818.3 |
| Ubiquitin-conjugating enzyme E2D 3 | UBE2D3 | Hs01518517 | NM_181892.2 |
| ubiquitin protein ligase E3A | UBE3A | Rh00963674 | XM_002804686.1 |
| Transport | |||
| Kinesin family member 5B | KIF5B | Rh01037194 | XM_002805607.1 |
| Dynactin 4 (p62) | DCTN4 | Rh01092757 | XM_001109230.2 |
| Dynein, light chain, LC8-type 1 | DYNCL1 | Hs00867659 | NM_001037495.1 |
| Microtubule-associated protein tau | MAPT | Rh04269822 | XM_001115803.2 |
| Disease specific | |||
| α-secretase cleavage of APP precludes amyloid beta formation | ADAM10 | Rh01109565 | XM_001097016.2 |
| α-synuclein, presynaptic signaling, membrane trafficking | SNCA | Rh1103386 | XM_001095402.2 |
| Amyloid beta (A4) precursor | APP | Rh01552279 | XM_002803170.1 |
| Presenilin (γ-secretase component)produces toxic α-beta 40–42 | PSEN1 | Rh01552279 | XM_002803170.1 |