Table 1. Theta values for allelic imbalance analysis.

	SNP 212		SNP 1533		SNP 1063
Experiment 1 a	Susceptible	Resistant	Susceptible	Resistant	Susceptible	Resistant
Rep 1 b	0.1894 a	0.3439	0.5882	0.6592	0.3201	0.3737
Rep 2	0.2335	0.4187	0.607	0.6850	0.2509	0.3860
Rep 3	0.2634	0.4705	0.5903	0.6775	0.2924	0.3765
Rep 4	0.2702	0.4609	0.4251	0.7285	0.2070	0.3830
Rep 5	0.3180	0.4698	0.4775	0.6734	0.3694	0.3508
Mean	0.2549	0.4327	0.5376	0.6847	0.2879	0.374
Std Dev d	0.0475	0.0540	0.0813	0.0262	0.0624	0.0138
P e		0.00014		0.00214		0.00243
Experiment 2
Rep 1	0.2262	0.3309	0.4815	0.5297	0.1614	0.2084
Rep 2	0.2201	0.3086	0.4933	0.5238	0.1779	0.1796
Rep 3	0.1691	0.3076	0.4288	0.5422	0.1450	0.2192
Rep 4	0.1727	0.3484	0.3894	0.5090	0.1474	0.1812
Rep 5	0.1713	0.2608	0.4208	0.5984	0.1399	0.2389
Mean	0.1919	0.3112	0.4427	0.5406	0.1543	0.2054
Std Dev	0.0286	0.0329	0.0435	0.0344	0.0154	0.0253
P c		0.00014		0.00214		0.00243

a Experiment 1 and 2 are replicates of the entire experiment

b Rep 1–5 are technical replicates within each experiment

c Significant differences in theta values for SNPs from SCN populations grown on susceptible and resistant soybean lines indicate allelic imbalances

d Std Dev = standard deviation

e P = probability from one-tailed Student's T-Test.