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. 2015 Sep 25;7(1):207–218. doi: 10.1039/c5sc02678d

Table 1. Summary of free energy calculation results based on crystal structures. ΔGcalc is the calculated standard binding free energy; ΔGexp is the experimental standard binding free energy. Reported are also the PDB files used as input and the experimental method used for the affinity measurement. All values are in kcal mol–1 α. All errors are one standard deviation. This is an estimate of the typical ITC standard deviation (1σ) based on the variability of the affinity values observed in the ABRF-MIRG′02 inter-laboratory assessment;67βthe error represents the standard deviation of two measurements; γno error reported as only a single experiment was performed. Values for the difference between ΔGcalc and ΔGexp might appear inconsistent due to rounding.

Cpd ΔGcalc ΔGexp ΔGcalc–ΔGexp PDB Exp method Reference
1 –10.4 ± 0.6 –9.8 ± 0.1α –0.6 ± 0.6 4OGI ITC 68
2 –9.5 ± 0.4 –9.6 ± 0.1α +0.2 ± 0.4 3MXF ITC 69
3 –9.2 ± 0.5 –9.0 ± 0.1α –0.2 ± 0.5 4MR3 ITC 70
4 –9.4 ± 0.8 –8.9 ± 0.1α –0.4 ± 0.8 4OGJ ITC 68
5 –8.6 ± 0.3 –8.8 ± 0.1β +0.2 ± 0.3 4J0R SPR 71
6 –9.9 ± 0.8 –8.2 ± 0.1α –1.7 ± 0.8 3U5L ITC 72
7 –5.9 ± 0.5 –7.8 ± 0.1α +2.0 ± 0.5 4MR4 ITC 70
8 –7.8 ± 0.3 –7.4 ± 0.1α –0.4 ± 0.3 3U5J ITC 72
9 –7.7 ± 0.4 –7.3 ± 0.0β –0.4 ± 0.4 3SVG AlphaScreen 71
10 –5.9 ± 0.2 –6.3 ± 0.1β +0.4 ± 0.3 4HBV AlphaScreen 73
11 –5.4 ± 0.2 –5.6γ +0.1 ± 0.2 Model AlphaScreen 74
Statistics
Mean absolute error 0.6 ± 0.1
Root mean square error 0.8 ± 0.2
Pearson's r 0.84 ± 0.05
Spearman's ρ 0.82 ± 0.06