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. 2016 Jan 5;16:5. doi: 10.1186/s12862-015-0577-9

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© Lipinska et al. 2016

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Posterior means of ω and probabilities for site classes in Esi0130_0068. a Posterior probabilities for site classes in Esi0130_0068 as calculated by M8 (beta&ω) model in PAML. The ω ratios are 0.00000, 0.00005, 0.00618, 0.12717, 0.64633, 0.96054, 0.99825, 0.99997, 1.00000, 1.00000 and 3.55267. Each of the first 10 categories has a proportion of 0.08717 and the last category has a proportion of 0.12826. Categories are grouped by ω < 0.65, 1 ≥ ω > 0.96, ω = 3.55. b Posterior means of ω, calculated as the average over 11 site classes. The amino acid sequence represents the genome strain (Ec32), the site numbers correspond to the position in the coding sequence