Table 3.

Total Number of Illumina Paired Reads of North Dakota Wild Accession of which at least One Mapped onto an LTR-RT of a Certain Family and Number of Paired Reads of which One Mapped onto an LTR-RT of the Same Family and the Other onto a Gene

LTR-RT Family	Total Number of Paired Reads of which at least One Mapped onto an LTR-RT	No. of Gene-RT MPR	No. of Gene-RT MPR × Million of Paired Reads of which at least One Mapped onto an LTR-RT
Copia-AleI/Retrofit	176,212	122	692.35
Copia-AleII	1,320,690	697	527.75
Copia-Angela	221,598	224	1,010.84
Copia-Bianca	47,430	37	780.10
Copia-Ivana/Oryco	19,394	44	2,268.74
Copia-Maximus/SIRE	1,760,696	834	473.68
Copia-TAR/Tork	193,224	146	755.60
Copia-Unknown	17,356	20	1,152.34
Gypsy-Athila	899,879	586	651.20
Gypsy-Chromovirus	6697673	3,780	564.38
Gypsy-Ogre/Tat	1,948,062	647	332.12