Table 4.
Comparison of HLA-E*01:01 and E*01:03 restricted peptides derived from either LCL 721.220 (0.220) or LCL 721.221 (0.221) cells
| Sequence | Length | Origin | Allele | Peptide-source |
|---|---|---|---|---|
| AQAAAPASVPAQAPKRTQAPTKASE | 25 | 60S ribosomal protein L29 | E*01:01 | 0.220 |
| AQAAAPASVPAQAPK | 15 | 60S ribosomal protein L29 | E*01:03 | 0.221 |
| AYVRLAPDYDALDVANK | 17 | 60S ribosomal protein L23a | E*01:03 | 0.221 |
| AYVRLAPDYDALDVAN | 16 | 60S ribosomal protein L23a | E*01:03 | 0.221 |
| ASGNYATVISHNPETK | 16 | 60S ribosomal protein L8 | E*01:03 | 0.221 |
| AGNLGGGVVTIERSK | 15 | 60S ribosomal protein L22 | E*01:03 | 0.221 |
| PRKIEEIKDFLLTAR | 15 | 60S ribosomal protein L38 | E*01:03 | 0.221 |
| NIDDGTSDRPYSHA | 14 | 60S ribosomal protein L27 | E*01:03 | 0.221 |
| TVVNKDVFRDPAL | 13 | 60S ribosomal protein L27 | E*01:03 | 0.221 |
| ALRYPMAVGLNK | 12 | 60S ribosomal protein L36 | E*01:03 | 0.221 |
| QTYSTEPNNLK | 11 | 60S ribosomal protein L28 | E*01:03 | 0.221 |
| PDPAKSAPAPKKGSK | 15 | Histone H2B type 1-H | E*01:01 | 0.220 |
| PDPAKSAPAPK | 11 | Histone H2B type 1-H | E*01:01 | 0.220 |
| PELAKSAPAPK | 11 | Histone H2B type 1-L | E*01:01 | 0.220 |
| PEPVKSAPVPK | 11 | Histone H2B type 1-M | E*01:01 | 0.220 |
| PELAKSAPAPK | 11 | Histone H2B type 1-L | E*01:03 | 0.221 |
| KQVHPDTGISSK | 12 | Histone H2B type 1-J | E*01:03 | 0.221 |
| VLKQVHPDTGISSK | 14 | Histone H2B type 1-J | E*01:03 | 0.221 |
| SEGTKAVTKYTSSK | 14 | Histone H2B type 1-L | E*01:03 | 0.221 |
| HAVSEGTKAVTKYTSA | 16 | Histone H2B type 1-J | E*01:03 | 0.221 |
| HAVSEGTKAVTKYTSS | 16 | Histone H2B type 1-L | E*01:03 | 0.221 |
| HAVSEGTKAVTKYTSAK | 17 | Histone H2B type 1-J | E*01:03 | 0.221 |
| HAVSEGTKAVTKYTSSK | 17 | Histone H2B type 1-L | E*01:03 | 0.221 |
| HAVSEGTKAVTKYTSA | 16 | Histone H2B type 1-J | E*01:03 | 0.221 |
| VAPEEHPVLLTEAPLNPK | 18 | Actin, cytoplasmic 1 | E*01:01 | 0.220 |
| AGFAGDDAPR | 10 | Actin, cytoplasmic 1 | E*01:03 | 0.221 |
Both alleles present similar peptides from certain protein isoforms