Table 4.

Significant marker gene expression associations (p <0.001) with positions of eQTL

	Gene (log ∆∆Ct)	Markerb	Chr.b	Pos. in cMb	F value	p value	-log p (LOD)	R2 in %
Drought stress genes	A1	SCRI_RS_134358	5H	149.9	7.45	8.86E-04	3.05	9.5
	A1	SCRI_RS_165400	5H	150.1	7.45	8.86E-04	3.05	9.5
	GAD3	BOPA2_12_31177	1H	38.0	7.81	6.03E-04	3.22	8.9
	GAD3	BOPA1_4403-885	3H	142.1	12.09	6.67E-04	3.18	6.9
	P5CS2	BOPA1_4403-885	3H	142.1	11.31	9.84E-04	3.40	7.5
Leaf senescence genes	Contig7437	BOPA1_4403-885	3H	142.1	7.36	9.05E-04	3.01	7.1
	GSII	BOPA2_12_30065	7H	40.4	11.36	9.60E-04	3.04	9.5
	hv_36467	BOPA1_6547-1363	1H	111.8	8.11	4.58E-04	3.02	7.9
	hv_36467	BOPA2_12_31461	2H	131.9	13.14	4.00E-04	3.34	11.2
	pHvNF-Y5a	SCRI_RS_152393	6H	64.4	11.48	9.09E-04	3.04	7.8
	pHvNF-Y5a	SCRI_RS_194841	7H	81.5	12.91	4.49E-04	3.35	8.7
Genes out of GWASa	AVP1	SCRI_RS_140294	5H	62.5	13.46	3.42E-04	3.47	9.1
	ETFQO	BOPA1_10126-999	3H	53.3	7.44	8.37E-04	3.08	10.1
	ETFQO	SCRI_RS_181376	5H	143.1	8.34	3.86E-04	3.41	11.5
	TRIUR3	BOPA1_4392-450	5H	44.5	7.64	7.07E-04	3.15	9.9
	TRIUR3	BOPA2_12_30717	5H	44.5	7.64	7.07E-04	3.15	9.9
	TRIUR3	SCRI_RS_41519	5H	44.5	7.64	7.07E-04	3.15	9.9
	TRIUR3	SCRI_RS_161614	5H	139.7	15.17	1.51E-04	3.82	9.8

^aGenes coding for proteins identified by BlastX of significant marker sequences out of a previous genome wide association study (GWAS) by Wehner et al. [20]

^bMarker positions are based on Comadran et al. [101]