Table 5.
Positions of the selected genes based on the barley Morex-contigs and their mode of action
| Gene | POPSEQb,c | Chr.b | cMb | Identity in %c | eQTLd | |
|---|---|---|---|---|---|---|
| Drought stress genes | A1 | morex_contig_38178 | 5H | 156.9 | 76 | cis |
| GAD3 | morex_contig_790741 | 1H | 42.0 | 81 | cis | |
| GAD3 | morex_contig_135241 | 3H | 147.0 | 75 | cis | |
| P5CS2 | morex_contig_2549060 | 3H | 30.2 | 76 | trans | |
| Leaf senescence genes | Contig7437 | morex_contig_47765 | 4H | 54.3 | 94 | trans |
| GSII | morex_contig_274546 | 7H | 70.8 | 92 | trans | |
| hv_36467 | morex_contig_138818 | 1H | 132.4 | 91 | trans | |
| hv_36467 | morex_contig_458133 | 2H | 58.0 | 81 | trans | |
| pHvNF-Y5a | morex_contig_244610 | 6H | 76.0 | 100 | trans | |
| pHvNF-Y5a | morex_contig_60611 | 7H | 70.8 | 95 | cis | |
| Genes out of GWASa | AVP1 | morex_contig_80803 | 5H | 44.1 | 75 | trans |
| ETFQO | morex_contig_6218 | 3H | 51.8 | 95 | cis | |
| ETFQO | morex_contig_1570014 | 5H | 152.4 | 100 | cis | |
| TRIUR3 | morex_contig_81592 | 5H | 42.0 | 88 | cis | |
| TRIUR3 | morex_contig_160473 | 5H | 129.9 | 71 | cis |
aGenes coding for proteins identified by BlastX of significant marker sequences out of a previous genome wide association study (GWAS) by Wehner et al. [20]
bGene positions are based on POPSEQ map (ibsc 2012)
cMorex contigs and identity comes out Blastn of the gene sequences against the Morex genome (ibsc 2012)
d cis eQTL coincide with the location of the underlying gene (position <10 cM), whereas trans eQTL are located in other regions of the genome Druka et al. [11]